BtaINT0050765 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12783875-12784717:+
Coord C1 exon
chr23:12783875-12783996
Coord A exon
chr23:12783997-12784598
Coord C2 exon
chr23:12784599-12784717
Length
602 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
AATTAGCTTGTGTACTTTAGATC
3' ss Score
4.72
Exon sequences
Seq C1 exon
GGGGAGCAGCTCTGGATCTGAAAGCCTGCCCTCCCAAGCCGTTTCGCTGGATCCTCGATATGACCTGGCTGAATCTTGTGGAACTGAGTAAACTTCCACAGTTTGCAGAAATTATGAACCAG
Seq A exon
GTAATAAAGGACTAGGAAAAAAGTATAGATCTGTAAACCCAAACACACCTGGGTCATTTAAATTGGGGCCTCCTGGTGACAAGCCTTTGAACCAGAGGAGCTGACACAAAAATGCACCTTTAAGACAACTGTGGCTCTCGTTCAAAGGCAATCTGGTGCACACCCCACAGTACATATGACGATTCTGGAGACGTTTTTGATTGCCACGAACTAGAGGCAAAGGTGCTCTGGTGAGTAGTGGGGAGAGGCCAGGGATGCTGCGAAACATCCTGCAATACGCAGGACAGCCCCTCACAAGATAAGATTAACCTGGCCCTGAATGCTCATGGGGCCGAGGTTGAGAAACTCTGGTCTGTGGTTTTTCCTTTCCAATCGTTGAGTTTGACTGATACGTGGTCCTCATTTTAGTGAATAATGTAGAAAAGCAATGGAGAAAGGGAATAGCAATATCCAAGCTATTTGAGTCATTGATTCTGAAGAAAAACGTAAAACAGTGTGGTTATGTTTAAAAAATTATCTGCCTGTAAAGAGTGACCTTTTAACATTGTTTAATTTTAATTGCATATATTCCTGAGGGTCGCTAATTAGCTTGTGTACTTTAG
Seq C2 exon
ATCTCTCGTAATGAGAAAGGCTGGAAAAGTTGGTTTGATAAAGATGCTCCGGAGGAGGAAATCATCCCTGATGGATATAATGACTCACTGGATACCTGCCGCAAACTTTTACTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:79
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCAGCTCTGGATCTGAA
R:
TGATAAGTAAAAGTTTGCGGCAGG
Band lengths:
239-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]