BtaINT0050618 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59536304-59540542:+
Coord C1 exon
chr20:59536304-59536519
Coord A exon
chr20:59536520-59540329
Coord C2 exon
chr20:59540330-59540542
Length
3810 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TGCTAATGTCTCCATGGCAGGTG
3' ss Score
8.53
Exon sequences
Seq C1 exon
GGCCTGCCCACTTACGACAGTCCCGAGGTGTTTGGGCTGCACCCCAATGCGGACATCACCTACCAGAGCAAGCTGGCCAAGGACGTGCTGGACACCATCCTGGGCATCCAGCCCAAAGACAGCTCTGGCGGAGGGGATGAGACCCGGGAGGCCATGGTGGCCCGGCTGGCTGATGACATGCTGGAGAAGCTGCCCCCGGACTATGGTCCTTTTGAA
Seq A exon
GTGAGTTGATGGCATCCTGACAGAATAGCTGTGGGTGTGCATGGTTGGTTGGTTGTGGGGGTGGTGAGGAAGCAGTGCTACACTAAGTCACTCAGTCGTGTCTGACTCTGCGACCCACGGACTGTAGCCTGCCAGGCTCCTCTGTCAATGGGAATTCTCCAGGAAAGAATACTGGAGTTGGTTGCTAGTTCCTTCTCTAGGGCATCTTTTTGACCCAGGGACGGAGCCCACATCTTTGCATCTCCTGCTTTGGCAGGTGCTTCTTTACTGCTGTGCCACCTGGGAAGACTGAGGAAGAAGGCAGGAGGGCAAAAATAATTTTTCTGAAATTAAAGAAATTATTTAAAAACCTCACTTCTTGAAGAAGCAGTAAAAGAAGTATTTGAACCTATCGATGTAATCATTTCAAAATACAAATAATAAACCTGATGAGAGAGTTAATCTTCATAGTTAAATTATAAGTGTGTACTGATGGGTTAGGATTATTTTTCTATAATGTCTCCTGGAGGCACTTCACACTGTCATTTGTTCAAACGAAAATGATGTATTCTTAGAGTAAAGCATCGATTATTTTACAAAAATAATTCAGGCCTTCTTAATTTCAGGAAGTCTATAGTTATATCATTAACTCTGCAGCTTCTTCATCACATCGGTTTTGAAAATTGATTTATCATTTTTTTAAATTAATGTATTTTATTTAACTGTGCTGGGTCTTGTTGTGCATGCAAGACGTGAGAGCTAGTTCCCTGACCTGGGCCCCCTGCATTGGAAGGGTGGAGTCTTAGCCACTGGACCACCAGGGAAGTCCCCCCAACTTGTCCTTTTAATATCAAGTAACTTCTAAGTGAAACTGACAGTTATGAAGGTTAATTTTTTTGACATTTTAGCATGTATTGTGGGAAGATTTACCCTGAAAACATGTTTAACTCTTTGCTAAAAGCAAAAGTAAGTGGCTTACTTTCCTTGTAGTCTTAAGAGATTTCTTGGACTAACCTTGTGACATTTCTGTCATAGGAGCACCAAGTTTCTTTATATATTGCCCTTTCCACCTGGTTTTCAGAAGGAATTCTGCATTTTGTTTCTTTAGCATCCTATTGTTTTCCATGTAGCAGGCCATTTCGGCTGCTAGTTTTTCACTATAGACTGAACTCAAAGAACTCTCACCAGGGGAATCATTTCCCCTGGAAGAAACTCTGATCACTTGGTTGGAGAAAATCAATACTGTAACCAGCTTTCATAAGCGCCTTTCATTATAGCATCAGGAAAGCAGTCATTCATGTCTAGCAGTGGCTGAAATATTTATAAAGCAACGAAAGTGCCTAAAATATATTAAGTGAAGTGGTAGTCACACAGACGTGTCTGACTCTTTGCGACCCCATGGATTGTAGCCTGCCAGGCTCCTCTGTCCATGGGAGTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTTCATAAATAAACGTGGTGGTATGTATGCAGTTTAGAACAGTCACCTTCGTTTTGCTAAATTTGCTTGCTGCTGCTGCTGCTAAGTCGCGTCAGTCGTGTCCGACTCTGTGCGACCCCATAGATGGCGGCCCACCAGGCTCTGCCGTCCCTGGGATACTCCAGGCAAGAACACTGGAGTGGGTTGCCATTGCCTTCTCCATTGTGTGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTTGCGTCCGACTTGTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCTAGGCAAGAGTACTGGAGTGGCTTGCCATTGCTGATAGAACAATTAAGCCTGGCATGATATCTGATCCACAAAAGACTCTGGATAAATACTTGTAAGACAGAAATGAATGAGTGAGTGGATGGATAAATGCTTTGATGGAAAAAATAAAAAGCTTTAAAAACAGAAATCTAGCTTTTTGAGACAGCCTTCAGAATTGTTGCATACGCATACACATCTGCTTGTGTGTGTCCATGCGTGTATTTTCAAGTCTTAGATTGGCAGTGAGTGAATGTTTCCCAATAACTGCAGTTGTTGTTTGGAAGACTGTGTGTTCGTGGACGTGGATTTTATATTCTTCTGTGAATTAATGGCTGCCTGTCTTCTCTCACCTGGGATGAAAAATCAGCTGGTCCTCTAACCGATATTTCTTTTATTTTTTCTCTGTTTTCTGACAGTAAAAAAAAAAAGAAAAAGCTTACTATTTATGGAATTGTAAAGTTTAGGGCCCTTTCAGAAGCCCTAGAATACCACGTATACAATATAACATTGTGTGTATGCTCAGTCCTGTCTAACTCTTTGTGAGCCCGTGGACTGTAGCCCGTCAGGCTCCTCGGTCCATGTAATTCTCCAGGCAAGAATACTGGAGAGAGTTGCCATTTCCCTCTCCAGGGGATCTTCTTGTCCCAGGGATCAAACCTGCGTCTCTTGTTTGGCGGTGAATTCTTTACCACTGAGCCACCAGGGAAAGTGAAAAGTAAAAGTGTTAGTTGTTGAGTGTTCGACTCTTTGCCAGCCTGTGGACTGTATGGGTCCTGGGCTCCTCTGGACACCAGGCTCCTTTGTCTAAGGAATTCTCCAGGCAAGAATACTGGAGTGGGTAGCCATTCCCTTCTGCAGGAGATCTTTCCAGCCTAGGGATCAAACCCAGGTGTCCTACATTGCAGGCAGGTTCCTTACCATATGAGCCACTAGGGAAGCCCTATATAGAACATTCAGTTCAGTTCAGTTCAGTTGCTCAGTCGTGTCCAACTCTTGGTGACCCCATGAATCACAGCATGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAGACTCACCTCCATCAAGTCAGTAATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGGGTCTTTTCCAATGAGTCAACTCTTCTCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTGGCATCATTCCTTCCAAAGAACGCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCAGTGCTCAACCTTCTTCACAGTCCAACTCTCACATCTATACATGACCTAGGAAAAACCATAGCCTTGACTAGACGAACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTTCTTCCAAGGAGTAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTTGGAGCCCAGAAAAACAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTTGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACATTCACTTTCATCAAGAGGCTTTTTAGTTTCTTTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAATCTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACGTGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTATGTTAAGGCTGTATATTGTCACTCTGCTTATTTAACTTATATAGAACATTAGTAGCTGTCAAATAATTTTTCATGTGCTAATGTCTCCATGGCAG
Seq C2 exon
GTGAAGGAGAGGCTGCAGATGATGGGGCCATTCCAGCCAATGAACATTTTCCTCAGACAGGAGATAGACAGGATGCAGAGGGTACTCACCCTGGTCCGAAGCACCCTGACCGAGCTGAAACTTGCCATTGATGGCACCATCATCATGAGTGAAAATCTACGAGATGCTCTGAATTGCATGTTTGATGCCAGGATTCCTGCTCGTTGGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]