MmuINT0050963 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28381073-28383168:+
Coord C1 exon
chr15:28381073-28381288
Coord A exon
chr15:28381289-28382955
Coord C2 exon
chr15:28382956-28383168
Length
1667 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTTGAATGTCTCCATGGAAGGTG
3' ss Score
4.19
Exon sequences
Seq C1 exon
AGCTTGCCTGCCTATGACAGCCCAGAGGTGTTTGGGCTCCACCCCAATGCTGACATTACTTACCAGAGCAAGCTGGCCAAGGATGTGCTGGACACTATCCTGGGCATCCAGCCCAAGGACAGCTCCGGTGGAGGGGACGAGACACGGGAGGCTGTGGTGGCCCGCCTGGCTGATGATATGCTAGAGAAGCTTCCAGAAGATTATAGTCCTTTTGAA
Seq A exon
GTGAGTCCACGATATCCACATTTCAGTCTTGGCTGTCTATGAGGGATTGAGGGGTAAGGAAGTAGGACAAAATGTGAGAACCAAAGGAGATCCCAGGCAAGCCACCAAAGAAAAGCCATGGAGAAACTGACTTGAATCTCTGCTTATTACTAACTGGTATTTGTCTAACTGGATTGTAGAGCCTTCTTTGAGGTACTTGATAATGCCATGGTTTAGATGAAAGCACTGTATTGTCAGAGTGAAGGACCAGTTATCATGTGTACATGTTTGTATGTGTATTGTTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAGTGCACAGCTTACAATGCAGGCTTTCTTAACTGCATGGAGGCTACATTTTTTATACATGAATATTTTTATCGACTCTTTGGGAATTTCACATCATGCACCCCCCAACACGACTCATTTCCTAGTCTTTCCATATCTGTTCTTTACCCTTGTAATCACCCCCAATAAAAATTAAAAAAAAAATTAAGAAAGCAAACAAACACAGGCAAAACAAAACCTATAAAACAAATCTCTGACCACTTAGGGTGATGGCTGGCCTGCTCCTCTGTCAATTGCAGAGGCTGCATTTTCCAACATCACTACTCTGCTGGCTTTTCATTTAACTAACTTTGAAAATTGATCCTTTTAGTATACAAATAGCTTCTAAGCATTACAAAAGTTAATGTTTTAGCATTTAATGCATGTTTTGAGAAAATTTACTGTGATATGGTTTATAAATCTTTGATAAAACTGTGACTTATTTTCCATATGGTCTAAGAAACTCATGACACAGCTCCTAACAACACACAAATGGCTTCCACATCCTGTTGTTCCTACCAAGCAGACAATTTTGTCTACTGATACTGAGCTCAAGGGCTCCTTGTCAAGAGAATAATTTCCCTGGAAGAATCTCTGATCACTCGCTCTGAGAAAATCAATACTGTTATCAGCTTTCATAAGGCCTTTTCATTACAGTGTTGGAAGAGAGATCATTGCATCTACTAGAGGTTAAAATATTTATGAAGCAATTAAAATATCTAAAATAGAATAATTATGTAACAGAACACGGTAACTAGATTTTGAAGACTTTTTTTTTTTTTTTTTTTTTTGCAGAATTTGTTAGAACCACTCCAGCATAAAATAGTCCAGCCTAACACACTATCTGCTATACAGAAGTTTCTCAATACATACCTGCAAAATAGAAAACAATGAATAGGTATATGTGCTGATGGAGGAAAGCAGAGTGCATTAAAAATGGATGCCTAGTTATCTGATACAACCAGCAGAGTGTTTGTAACTATATGCATGCTCCCTGCATATACTTACATATGTGTCATATTGGCAGGGAATAAATAATTCTCAGTAGGTTCATTTGATAAAGTGCTTGTAGCTATATACATTTTGCATGCTTCTTTGAATTAATGGCTCCCTGTTCTTTCACCCATGCTCTAAAAAAATTGGGCTGGTCTTATAAAAGATACTTGTTTTCTTATATCATCTTTTTTATTTTGCATATTAAAAAACCTAAAACCATATTATTTATGGCATTGTAAAAAGCAGGGCTTATTTAGACACCCCAGGCACAATCCTATACTATCATAGTAGCAATCTAATTCCTGTTGTGTACTTTGAATGTCTCCATGGAAG
Seq C2 exon
GTGAAGGAGAGATTGCAGAAGATGGGACCATTCCAGCCCATGAACATTTTCCTCAGGCAGGAGATTGACAGGATGCAGAGGGTACTCAGCCTTGTCCGTAGCACCCTGACTGAGCTGAAACTAGCTGTTGATGGCACCATTATCATGAGTGAAAATCTAAGAGATGCTCTGGATTGCATGTTTGATGCCAGAATCCCTGCTCGGTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:75
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTGCCTATGACAGCC
R:
TGGTGCCATCAACAGCTAGTT
Band lengths:
353-2020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: