GgaINT0093215 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76699730-76702210:+
Coord C1 exon
chr2:76699730-76699945
Coord A exon
chr2:76699946-76701997
Coord C2 exon
chr2:76701998-76702210
Length
2052 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CTTTGGTTTACTACTAACAGGTA
3' ss Score
6.6
Exon sequences
Seq C1 exon
AGTCTTCCTGCTTATGACACACCAGAGGTATTTGGTTTGCACCCCAATGCTGATATCACTTACGAAAGTAAACTTTCCAAAGACATATTGGACATCATCCTCAGTATTCAGCCAAAGGACAGCTCTGGTGGAGGAGGTGAAACCCGAGAGATAGTTGTAGCCAGACTAGCTGATGATATGCTGGAAAAGCTTCCTGCTGATTATGTACCATTTGAA
Seq A exon
GTGAGTTACTGAAATTCTGTCAAAGACATTTGCTATATCTTACTTTGTGTGAATTAAAAAAAAAAAAAAAGTTATATTGGATGCTCTAAAAATGTGTTTATACTCATTCATCCAGATTATACTTTAAAAACATATTTTTTAGTGGCCTGACCAGATACTTAACATCTATAATGAAGTCACTAAGTATGGACTGAAGAGCTTTTTCAAAATATTAAACTGGTTAGTGCTCAAGTTGTCATTTGCACTAGGGAGGGCAGAATGAGTCATTAGTGTTTCAGGTAAGCTTGTTGACATTGTAGTAGAGAACTAAGGTGGTGTTACAAGTGTACTTACGCTTCTAGAAGTATTATGACATTAATATATGTATTACTCTGGGATTCTGCTTATAATGTGCAGGTAGTTTTATGTTGTTTCACCTTTCAGCAGAAGGGATTGATTTTTTTTTTTTTTTTTGCCAAAAAGTTTAGCAAGTAATAGCTTTCATTGTCTGAAGCCTAATGTTAGTATCTCAGGACTCATATTTACATGTAATAGCCCATGTAATGATATTTGTAATGGCCACTTGATCCTTCACAGAAATTTTGTTTCTGAAATAGTAACCTCATCTCTGTTTATGTGGAAGATTTGATATCTCTGGAGGTGAAAGATTTCCTAAGGGTAGAAAATTTTTACTGAACAGAATACCTGGACACAAATAGGTTATACTCTGTCCCCATCCTCAAAGCTAGAGTTTAGTTGAGTGCTTGAATAATTTGTGTTGTTTCTGGGTCTTTAGTTGTTCTAAGTTGTACTTTAGAACCCCGGAATTTTAGGATACGGACATTATATTTGTTACCAGATGAAGCTGGTTATGAGCATCAAATAAATGAGACAAAAATGCTTGTAAAATAGTTAAGGTTCAATATGATACATAAGATACAAAAATTATTGTCGATAAGTATATAAATTCCATTTTTATTAATAGAATCATATAGTCAAAGAATGGCAGCAGTTCAAAGAGACCTAAAAGATTATTTATGTTCAACCCCTCGCCATGGGCAGAGTTACCACCCAGTATATCAGACAGCCCAGGGCCCTGTCCAATCTGGTCTTGAATGCCTCCAGGGATGGGGCATCTGCAGCGTCTATGGGCAATTTGTTCCTGAGCCTTACTGCCCTCTGAGTTAAAAAATTCCTCCTAATATGTAATCCAAATCTGCCTCTTTTAGTTTTAAACCATTCCCCCTTGTCCTATCACTATTAGATTGTATAAAAATTCAGTCTCCCTCCAGTTTATAAATTCCCTTCAAGTACCGGTAGGGTGCTATCAGGTCTCCCTAGAGCCTTTTCTTCTCCAGGTGGAACAAGCCCAGCTCCCTCAGCCTTCACAGGAGAGATGCTCCAGCACTGGAGCCCTCTGATCATCCTTGTGGCCATCCTCTGGGGCCATTCCAACAGCTCTGTGTCTTTCTTGTCTTGAGGGCTCCAGGCCTGAACTCCAAATAGAACCTCAAAAGTGCAGAGTAGAAGACCATATAAATTATAAAATATTTATTTATCTCCATACAATTGTTATTAAATTGTTAATTTTTCACTTTTGATTAAAAATATATCAGCACTTTTTATTGGAAATACAAGACTGTGTACCATTGTGATAGTTCCCATGCATTGCTGATAAATAGTGCTGGTATTCTGAGGCAGAGTGGCTGAGGTAATCACTCTTGATTGGTTTGTACAAAGTGAACCTTGGAAATTACCTGTTGACTTTGTAGTTGAAGTTCTTGAAATGAAATATGGCCTAAATGCTGCTTAAATTACCTTAGCGTATAGAATTATATACAGAATGAATCATAATTCAAACTAAAACTACAGCCAGTCTCAGCATCATAGATTTTACTTAGAACAAATCCTGTATTTCTGTCTAGCAGAGCACTTGAGAAATATACCAAGCTGACCGTTTAACTTCTTTAGTGAAAGTATTATATTTTAAAAATTGTATCGATGCCTGACCTTGACAGATATCCACCTTCGGCTTTTATTTCTGTTGAAAGGTCTTTGGTTTACTACTAACAG
Seq C2 exon
GTAAAAGAGAAACTGAAGAATATGGGACCTTTTCAGCCTATGAACATATTTTTGCGACAGGAGATTCAACAAATGCAGAGAGTTATTTCATTAGTAAGAAGCACTCTGACTGATCTAAAACTTGCCATTGATGGTACAATTGTTATGAGTGAAAACCTGAGGGATGCTTTAGACTGCATGTATGATGGGAGGATTCCTGCGAGCTGGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]