BtaINT0050658 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84878296-84879857:-
Coord C1 exon
chr2:84879731-84879857
Coord A exon
chr2:84878516-84879730
Coord C2 exon
chr2:84878296-84878515
Length
1215 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCACTTAAAAAAATTTTAAGTTA
3' ss Score
1.99
Exon sequences
Seq C1 exon
GTGGTGGTCGAAATCCAGTAACTCCTCGATACATGCGGCATTTCAATATTATAACAATCAATGAGTTTAGTGATAAATCTATGTTTACAATATTTTCTAGAATCTTAACCTGGCATTTAAAAACCTG
Seq A exon
GTAAGTAATTGAAAGTGTGTTTGTTTTTTCCTTAGTGGGTATAAAATCTTTGGGGAACATGTCAGTATAAGTAGTGCTTCTCAAACTTCCACAAAAGCACCTCTAGACAAGGAAGAAGGTAACAGGCAGCAGTTGCTTTCCTCTGCTCCCATCTCCAGGAATGGGAACAGAACACAAAAAGCCTGCAGGATCTTTCTCTTTTTCCTTTATTTGTCTGAAGTCTTAGATTTTAACCTAAAAATTCATACACATTTTGCATCCCGTTTTATAATATGTCCATATTGGAAGGATCAATATTTTGAATTTTTGCCATTTAGTTCAGTTAATGCTGGAAAGATTGCCAGGTTTATCCTGTGACTTTGACAGCCTCTAGTAAAACTCTTGAGTTCCCCAGGGGTGTCCATGTCTAGGTTTGAGTGTAGCCTTGGAGCCTGTGCCCTGGGAAAATGTTGCTCCCTAAATCTGGACACTCAGCACTTCTCCATAAGATTCTTGGGGGTAGGGAGCCAAGTGGCCCTGAGCAGTACAAGTGTTGGCTCCCCGACGTGGACACCATTCTTAGGAAATTGTCATTCCTTGTCTTATGCAATGGTGATGGAAGGGAAAGCTGACTGCTCATCAAGCCAGAAGTGAAATAAAGCCAATTTTTTCAAATGGATATTCTCTCCCCAGGTTCTTCTACCTTAATCATTCCTTTGCCCTTTAAAAGAAATCTTGGTTCACTATTTCACTTTGTTTTAACTCTCTTTTTTCTTTTTCCCCTTTCTTTACTTTTTTCTGATTTTTTTTCTCCCTTCCCTTTCTCTGAAAATACCCATTTCACCAGTGTTCTTCATGGATCCTATCTATATGCAGCTAAGAATGCCAGGTAGTGGAAGAGGTTAGGAAGCATCATCTAGTAGATCCTGGGTTTAAGTTACATAATATGGGTTCCTTGGCTGGCTCTTCTGCCCATTTATTTAAGCAGTTTTAAGCTCATTAAACTGGTCCTGCTTACTCATGGAGTTCCTTTGAACATAAAATAATGAATGGAAAGTAGCTTTAAAAGAAGCAAACACTCTATTATTATTATTATAGCAAGAAAGGGTAATTTTGTAAACTAAATCAATTGATGTAATATAAGAAAAATTCATGTTAGTTGTACTAAATAGCACTATGTATCATAAGTCTATGTTTGCTAACATATTCTTTCTCTTCACTTAAAAAAATTTTAAG
Seq C2 exon
TTATAAATTTCCAGATGACTTTCTAGATTTGACAACACAAATTGTAAATGGTACAATGACTCTGTATAAAGAAGCAATGAAGAATCTCTTGCCTACTCCAGCTAAATCTCACTACCTGTTCAACCTCCGAGATTTCTCCCGTGTCATTCAGGGTGTATGTTTGTCAAGACCAGAAACAGCAGAGACCAAAGAAGTGATTAAACGTCTTTGGGTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784:ENSBTAT00000038364:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTCGAAATCCAGTAACT
R:
TGAACCCAAAGACGTTTAATCACT
Band lengths:
343-1558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]