DreINT0058161 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25183124-25183543:-
Coord C1 exon
chr9:25183417-25183543
Coord A exon
chr9:25183344-25183416
Coord C2 exon
chr9:25183124-25183343
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTTCTCTATTTAACTACAGATT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GTGGAGGTAGGAACCCCGTGACTCCTCGGTTTTTACGGCATTTCAACACAGTGACTATTAATGAATTTGATAACAAAACCATGTTCACCATTTTTTCAAGAATTCTGGACTGGCACTTAACCATAAG
Seq A exon
GTAACATTGCTCCATACTTATGAGGTTAATAAATAAATTAAAATGTTAACACATTTTCTCTATTTAACTACAG
Seq C2 exon
ATTTCCATTTCCCAAACCGTTTGCAAGCGTCACCTCTCAGATCATTAGTGCCACTATGTCTGTGTACCAAGAGGCTACTAAGAACCTTCTACCAACCCCAGCTAAATCCCATTACCTTTTCAATCTTCGAGATTTTTCCCGCGTCATTCAGGGTATCTGCTTATCACGGCCAGAAACTGCAGACGACCTTACAGCCATCAAACGGTTATGGGTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGACTGGCACTTAACCAT
R:
CAGATACCCTGAATGACGCGG
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]