HsaINT0049921 @ hg19
Intron Retention
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196736974-196738418:-
Coord C1 exon
chr2:196738292-196738418
Coord A exon
chr2:196737194-196738291
Coord C2 exon
chr2:196736974-196737193
Length
1098 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTATTTAAAAAATTTTTAAGTTA
3' ss Score
3.9
Exon sequences
Seq C1 exon
GTGGTGGTCGAAATCCAGTAACTCCTCGATACATGCGACATTTCAATATTATAACAATCAATGAGTTTAGTGATAAATCCATGTATACAATCTTCTCTAGAATCTTAACTTGGCATTTAGAAATCTG
Seq A exon
GTAAGTAATCAAAATTTGTTTTTTTTTTAATTAGGAGGTATAAAATATTTTAGAAACATATCAATATTAAGTAGCGTATTTCAAAGAACAAAAGCATTCCTAGATAAGGAAAAGTTAACAGACAACATCGTTTGCCTCTGTTCCTGCCACCTCCCAGTGTGGGAGCATAACACAAAGAGGTCTGACCATTCTGCTATGTAATATGTTCACGTTTGAGTTATTATTTTGAATTTTCACCACTGAGTTCAATTACTGCTGGAAAGATGTACCAGGTTTATGCTGTGACTTTGATACCCTCTAGTAGAACTTGAGTTCTGCAGGGGTATTCGTGTCCAAGTCTGAGAAGTAATGCCTTGGAGCTGCCTAGCTGCAGAGATTGTGCTACTCCACAAGATGCAGAGATATCAGGGAGCCAAGCTGACCTGGGCAGGGGAAGTCTGTCTGTGTGCCCATGCCCATTCTCAAGAAATTGTCATTCCTTGCCTTATCCAGTGATGATGGAGTAAACACCTGGCTCCTAGACAAACCAGAAGTTAAATATAGGCAATCTTTCTAAATGAAAATTATTTCTCTACATTCTTTATACTCTAATCATGCACTTTGTCTTGGCTCACTGTTTTACTTTCCTTTTTTTCTCTTTTCCTTATTTTTTTTACGTATTTTAATTTTCTTCCTTTTTTTCCTCTGAAAATACCTGTTTCACCAGTGTTCCTTATGGATTATATTTATATGCAGTTGAGAATGCCAGGGAATGAAAGAGGTCGGGAAATACTTGTCTAGTGGATTTGGGATTACATAATCTGGGTTCCTTGGCTGTCTCTTCTGTTCACTTACTTAAGTGATTTTAAGTCCATTAAACTGGCCCTGCTCATTTCACAGGGGTCTTTTGGACATAACATAAAATAGTACATGGAAAATAGCTTTAAAAGGAGTAAAAATCTATTAGTATTATTATTATAATAAGATATGGTAATTTTATAAATGAAATTGATTTAATCAAAATTAAAATTTTATGTTGGTCCTGCTAAATATCCTTTTTGTGTCGTAATTCTATAATTGCTAACATTTTCCTTTCTTTTTATTTAAAAAATTTTTAAG
Seq C2 exon
TTATAAATTTCCAGATGAATTTCTAGATTTGACCACACAAATCGTAAATGGCACAATGACTCTGTATAAAGAAGCAATGAAGAATCTCTTGCCTACTCCAGCTAAATCTCACTACTTGTTCAACCTCCGTGATTTCTCCCGTGTCATTCAAGGTGTTTGTTTGTCAAGACCAGAAACAACAGAAACCACAGAAGTGATTAAACGTCTTTGGGTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-DNAH7:NM_018897:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTCGAAATCCAGTAACT
R:
TGAACCCAAAGACGTTTAATCACT
Band lengths:
343-1441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)