BtaINT0050715 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12659422-12659954:+
Coord C1 exon
chr23:12659422-12659559
Coord A exon
chr23:12659560-12659713
Coord C2 exon
chr23:12659714-12659954
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAATAATTTTTTTCTTAAAGATG
3' ss Score
5.31
Exon sequences
Seq C1 exon
AAAGGAGCTCAACTTGCTGCAGAAGCTGTATGGACTGTACGATACTGTGATGGGCAATATTAGTGGCTATTATGAGATACTTTGGGGAGATGTAGATATTGAAAAAATTAATGCAGAACTTCTGGAGTTTCAAAACAG
Seq A exon
GTGAGTTTCAATTGCATTAAACTTACCAATTTATAGTGCCTATTTTAGGATCCTATAGGAATTTCACAAATGATTTTATCTTCTGATATATTGCTATATATTCATAACACCTTCTTCAAAGAAATGTGTAGATGAAATAATTTTTTTCTTAAAG
Seq C2 exon
ATGTCGTAAACTGCCAAAAGGACTTAAAGATTGGCAAGCTTTTTTGGATCTGAAAAAAAGAATTGATGATTTCAGTGAGTCATGTCCTCTACTAGAAATGATGACCAATAAGGCAATGAAACAGAGGCACTGGGATCGGATCTCTGAGTTGACCGGAACCCCATTTGATGTGGAGTCAGATTCTTTTTGTCTCAGAAATATTATGGAAGCACCACTCCTTAAAAATAAGGATGATATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(11.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACGATACTGTGATGGGCA
R:
CGATCCCAGTGCCTCTGTTTC
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]