GgaINT0087311 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30683192-30685017:-
Coord C1 exon
chr3:30684872-30685017
Coord A exon
chr3:30683433-30684871
Coord C2 exon
chr3:30683192-30683432
Length
1439 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
TCTATTTAACTCAATTGCAGGTG
3' ss Score
8.65
Exon sequences
Seq C1 exon
TCTTCCAGAAAGGAGTTAGCCTTTCTTCAGAAACTGTATGGATTGTATGATGCTGTAATAAACAGCATAAATGGCTATTACGAGATACTTTGGACAGATGTAGATATTGAAAAAATTAATGCTGAGCTTCTGGATTTTCAGAACAG
Seq A exon
GTGTGATGATAAGATGAACTGTATCTTATGTTGAATTCATTAAGATTCAGGTGACTTCAGTAGTGTTCTTTGCTATATTTACATACAAAACACAAATAACGTTTATCTTAAGGTGATCGGACTTGCCAAGGAGAGCAGGATAATGCTGTACTTTTATTTAACCAGCCTTTTACCTGTAGTTTTGATAGCAGGTGTTGTGTTAAACATTCACTCACACCCCTACGGTGGAACTAGGGAAAGAATTGGAGAAATAAAATAAAATAAAAAAAAAAAAAGGTAAAACCAAAGGGCAGAAATAATGTTTTAACAGGGCAGAAAAAGAAGGCACAGTAGTAGTAATAATAATAAAGGATATTCAGAACAAATGATTCACAACAGAGTTACTCACCACCCACTGACCAATGTCTGTTTTTTTCCCAAGCAGTAGCTCCCCAGCACTAGCCAATTCCCCACTTTTATATTTCTGCATGATGTCATATGGTATGGAATATGCCTTTTGCCAGTTTGGGTCAGCTGTCCTGGTTATTTCTCCTCCCAGCTTCTTGTGAAGCCCTAACTTCCTCGTTGGCAGGGCAGCATACGAAGCTGAAAGGTCTGTGATTTTGTATAAACACTTCTCAGCAACAGACGAAACATTGATGCGTTGTCAACATCATTTTCATCCTAAGTCCAAAGCACAGAATTATACCAGCAGCTAGGAAGAAAGCTAACTTTATTTTATTAGTTTGCTTCAGAAATATTTTTTAATATTTTAAGGAGTACCTTTTATTATTATTGGAAGAAATAACTGTAGGACAAGAATTACTTTGCAACAAAATAACTTGTTAAGTTCAGTCCACCACATACCTGATATGTAACACAGTTCCCCATTATGACAAGCTCCACCGTATTTGGTAGGCTCTGTAAAAGTAGGGCCAATGCAATAATTATTCCTTTAACTCCCTTTCCTTGCCCTACACCCATTGGAAGTATTTAGTTTTCATTTTCTTAGCTAATGTTTTCAGGACCTCTTACCAATATGAGAAGAGGAGGTGATCATATATTTCCAATTTCTATGTCCATCTCCAAAGTGATATGATAATGTGTGTCGTGTATTATTGATTTCTGCAAGATTTACATATATGAAGTTAACTAATATGGTTTTTATTAATAAATATTTGTAAGGAAAAGCAGCTAATGTACATATATCTTAACGCAAACTGCAATATTTCTGTTTATTGGGTAAAAAAATGTTAAATATATTTGTTAGGAGGGTATTTACACAAGTTGTGCTTTGGTTTCTTTTCTAAAAAGGTGGGTAATTTGACACAATGTTACATAGAAATTGTTAACTTTGATAGGAGTTTCTTTGCGCCTCCTATCTGTTTTTGGAATGTTTTTAAGATTTCCTGTATCTATAAAAGGCCATTTACTACTGCATCTATTTAACTCAATTGCAG
Seq C2 exon
GTGCCGTAGACTACCTAAAGGACTCCAAACCTGGCAAGCATTTTTAGATCTCAAGAAAAAAATTGATGATTTTAGTGAGTCTTGTCCTTTGTTGGAAATGATGACTGACAAAGCAATGAAGCCAAGGCATTGGAACCGTATAGCTGAAGTAACAGGACATCAATTTGATGTAGAGTCTGATTCATTTTGCCTTCGAAACATCATGGAAGCCCCCATTCTTCAAAATAAAGATGATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(11.7=100)
A:
NA
C2:
PF083938=DHC_N2=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTTCTTCAGAAACTGTATGGA
R:
GGGGCTTCCATGATGTTTCGA
Band lengths:
342-1781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]