RnoINT0049179 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9398922-9399977:+
Coord C1 exon
chr20:9398922-9399059
Coord A exon
chr20:9399060-9399736
Coord C2 exon
chr20:9399737-9399977
Length
677 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTTCTTTCTCTTCCTGAAAGATG
3' ss Score
7.57
Exon sequences
Seq C1 exon
AAAAGAGCTCAACTTGCTTCAGAAGCTGTATGGCTTGTACGACACCGTCATGGGCAGCATCAGTGGCTATTATGAGATCCTCTGGGGAGATGTGGACATTGAAAAGATCAATGCCGAGCTGCTAGAATTCCAGAACAG
Seq A exon
GTGAGCCTCCGTCACGTTAACAAGGCTCCCGTTAAGACCGATCACAAGCTAGGGCTGGAGGGATGGCTCAGTGGTTAAGAGTGTGTCTTGCTCTTTCCGAGGACCCCTGTTGGGTTCCTGGCAACCACATCAGGTGGCTAAGAACCACTTGTAACTCCAACTCCAGGGCACCCTCTTCTGGCCTCTCCCGGTACTGCATGCATTTGGTGTATCTACCCAACATATCCACATATACCCCTCCCCTTGCAATTAAAAAAATAATTTTTTTTTTAAAAAAAGAGGCATACCATGGTCTGGCGAGATGGTGCAGCAATTCAGAGCACTGGCTGTTCTTCCAAAGGACCTGGACTCTGTTCCTAGCGTATGCATGGTCGCTCACAACTATCTCTCAGTTTCATGGGATCCAACACCCTCTCCTGGTCCCTTTGGGCACCAGGCATAGAAATAGTACACATACACACACGCAAGCAAAACAGTCATACGTATAAAATAAAAATGAAAAGATGCTTCACAAATGAAGGGGGCGGGGGTGCACATTACTTTTGTCTGTTTATAATACTTCCTTCAAAGTGCGAACCAGGGGTTGTGGGGGAGAGCTTTTTTAAAAACCAAACCAACAACAGTAACAACTCCACAGGTGAGAATCATTCTTTTTCTCTTCTTTCTCTTCCTGAAAG
Seq C2 exon
ATGTCGAAAACTTCCCAAAGGACTCAAAGACTGGCAGGCGTATCTGGACCTCAAAAAAAGGATCGACGACTTCAGTGAGTCGTGTCCGCTCCTGGAAATGATGACCAACAAGGCAATGAAGCAGAGGCATTGGGACCGCATCTCGGAGCTCACCGGCACCCCGTTCGACGTGGAGTCCGATACGTTCTGTCTGAGAAATATCATGGAAGCGCCACTCCTGAAGAACAAGGACGATATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(11.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGGCTTGTACGACACCG
R:
CCTTGTTCTTCAGGAGTGGCG
Band lengths:
342-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]