BtaINT0050721 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12672552-12673177:+
Coord C1 exon
chr23:12672552-12672656
Coord A exon
chr23:12672657-12673015
Coord C2 exon
chr23:12673016-12673177
Length
359 bp
Sequences
Splice sites
5' ss Seq
ATTGTAATT
5' ss Score
-0.94
3' ss Seq
TTTGTAATATACTGTTTCAGTTG
3' ss Score
7.21
Exon sequences
Seq C1 exon
CCACATCTCCCTGCAGTGTCTGACAACATAAATGAGGTGACCTTTCATGCAAAAGACTACGATCGTATCATGGCTGTCATATCAAGAGAAGGAGAAAAAATCATT
Seq A exon
GTAATTTAACTTGATTAAAATTTTGTTAGGGTTTCTTTAAAATGTAGAATGCAGTTCTCTTATGAGAGAAAGGGAGGGAGTTGAGTCAGGTTCTAGTTCTGTAGTCTTTCCTGGCTTTGTTACAAACTAGTTTAGATAACTCATTTAATTTCTCTGGGATTCATTTTATCACCTATACAATGAAAGTTTTAGACCAAATGATCTTTATACTTCTTGCTACATTATTAATTAATTTTACTCATGTTTTAAGTATTTTGTGTGAAATTGTTTGCTTTGTCTCGAGGTACTGTGATTTAGGACATTTGTAAAAATATCAAATTACTATCTATTTGTAACCTATTTGTAATATACTGTTTCAG
Seq C2 exon
TTGGATAGTCCTGTTATGGCCAAAGGTCCCGTGGAGATTTGGCTTCTGGACCTATTAAAAATGCAGATGTCGTCATTGCATAATATAATTCGATCCGCATTCTATCAAATCAGTGATTCAGGATTTCAGCTGTTACCTTTCCTCAATCACTTTCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
NA
C2:
PF083938=DHC_N2=PD(9.0=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCTGCAGTGTCTGACA
R:
TGTGCCGGAAAGTGATTGAGG
Band lengths:
262-621
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]