GgaINT0087317 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30679228-30679790:-
Coord C1 exon
chr3:30679686-30679790
Coord A exon
chr3:30679390-30679685
Coord C2 exon
chr3:30679228-30679389
Length
296 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATT
5' ss Score
6.28
3' ss Seq
CCCTTTTATTAATTTCTCAGTTG
3' ss Score
7.37
Exon sequences
Seq C1 exon
CCACATCTGCTTTCCATATCTGACAATATAAATGAAGTAGAATTTCACCAAAAGGATTATGATCGCATACTGGCAGTCATATCAAGAGAAGGAGAAAAAATACCG
Seq A exon
GTAATTTGCTGATTTTTTTATTTTATTATTATTTCCTCCTCCCCCACAGAAATCTCATAATAGATAAATCATTCTATTATCGAACATATCAATATATATTAAGTTGAGTTACTGTTAATTACAAATACAAGTTTCAATCATCAATGTAATAAAACTGTTGTAATTTTTTGCAGTATTTATAGCATTTAAATTTGTAATTCTTGTGCAAAAAATTTTAGTAACTCTCTATTAACTAACAGTATTGAACAGAAGTTTGTTAACTATGTCTTATTTTCTCCCTTTTATTAATTTCTCAG
Seq C2 exon
TTGGACACACCAGTGATTGCAAAAGGACCGGTAGAGCTTTGGTTGCAAAATTTATTACATGTTCAGCAGATTTCATTGCATGGTGTAATTAGGGCAGCATATTACCAAATCAGTGACACAGGATATGATCTGCTGAATTTTCTCAACCACTTTCCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.3=100)
A:
NA
C2:
PF083938=DHC_N2=PD(9.0=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATCTGCTTTCCATATCTGACA
R:
TGTGCTGGAAAGTGGTTGAGA
Band lengths:
266-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]