MmuINT0051144 @ mm10
Intron Retention
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30728163-30729242:+
Coord C1 exon
chr17:30728163-30728267
Coord A exon
chr17:30728268-30729080
Coord C2 exon
chr17:30729081-30729242
Length
813 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TGTTTTGTTTTGTTTTAAAGCTG
3' ss Score
9.45
Exon sequences
Seq C1 exon
CCACATCTCCCTGCAGTGTCTGACAACATCAATGAGGTGACCTTCCATGCTAAAGACTACGATCGGATGACGGCCGTTATATCAAGAGAAGGAGAAAAAATCATG
Seq A exon
GTAATTCATTTAAAAACTTTGTTATTAGGACTACCCTGAAGACCAAGGTTGAGGAGAAAGCCATTTACTTTTGAAAGATGAGGGTGTGGGGAGTAGGGTGAGTAACCTTGGGTTCTGGCCTTGTTATGAATCCATGTAGATACATCATTTAACTTCTCTGAGACTCATCACCAGTTACATTGGTGTTTAGACTACACCATCTCTATAGTCCCTTCTGTTCATGATTTTAGCTTAGTTCACCCTTGCTTTTCAATATTTTGCATAGGGAGCTGGAGAGATGGCTCAGTGGTTAATTAAGAGTGTTAGCTGTTCTTCCAGAGGATCTGACGTTGGTTCACAGTACTCACACCAGGTGGCTCACAGCCATCTATAACTCCAGTTCCAGGAGATCTGACATCCTCTTCTAGCCTCCTTGGGCGCTCCCACATGCATGGAGTGCATGCACACACACACACATGCACAAGCATGCATGCACATACATGCACATGCATACAAGTACATGCATGCACACATACACACATGCATGTGTACACACACACACACATGCACACACATACATGTACGGGGTGAGAAGAGGAGAGAAATACAAATATACAAATAGAGCTGTGGTCACACTTATTCAAGCACACCTATGCACACACACGCATACAATGCTCACATACACAAATCAGTCAGTAGATATTTGACACGAGCTATAGAAGAGCTTATTTTGTGTCACAGTACTAGGATTTATCAAGTGTGACAATTTGTAAAACCACCCTATTCATAATTGGTTATATGTTTGTATGTTTTTTGTTTTGTTTTGTTTTAAAG
Seq C2 exon
CTGGATACTCCCGTTATGGCCAAAGGGCCTGTAGAAATTTGGCTTCTGGACTTGTTAAAAGTACAGATGTCATCACTCCATAATATCATCCGGTCTGCCTTCTACCAGATCAGCGATTCGGGCTTTCTCCTCCTACCTTTCCTGAACCACTTCCCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826:ENSMUST00000170651:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
NA
C2:
PF083938=DHC_N2=PD(9.0=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCTGCAGTGTCTGACAA
R:
CTGTGCTGGGAAGTGGTTCAG
Band lengths:
262-1075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types