RnoINT0049186 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9408377-9410021:+
Coord C1 exon
chr20:9408377-9408481
Coord A exon
chr20:9408482-9409859
Coord C2 exon
chr20:9409860-9410021
Length
1378 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
GTTTTGTTTTTTTTTCAAAGCTG
3' ss Score
7.61
Exon sequences
Seq C1 exon
CCACACCTCCCTGCAGTGTCTGACAACATCAATGAGGTGACATTTCATCCTAAAGACTATGATCGGATGACGGCCGTTATATCGAGAGAAGGAGAAAAAATCATG
Seq A exon
GTAATTTACCTAAAAACCTTGTTAGTAGAACTTCCCTGAGGTTGAGGAGAAAGCAGTTTACTTTTGAAAGATAAGGGTTTGGGGAGTAGGGTGAGTAACCTTGGGTTCGAATTCTGTAGCTCCAGCCTTGCTAGGAATTAATGTAGATAGATAAATCATTTAACTTCTCTAAGACTCATTTTATCACCAGTTACATTGGCATTTAGACTACACGATCTCTGTAGTCCCTTTTGATCACGATTTTAGCTCATTTTTACCTGTGCCTTTCAATATTTTGCATAGGGAGCTGGAGCGATGGCTCAGTGGTTAAGAGTGCTGGCTGCTCTTCCAGAAGATCTGATGTTGGTTCCCAGTACCCACATGGTGGCTAACACTCACCTATAACCACAGTTCCAGGAGACCTGACAACTTCTTCTGGCTTCCTTGGGCTTGCACATTCACTGGGTGCACAGACACACAAGCACACACAGATGCATACAGACATACACACACACACATATGCACACGCACATGTGCATGCTCACAAGTACACACACGTATATGCATGAACACAGCGCACATGTGCACACATATACACACATGCACATGCATGTACACACACATGCCACATGCTCTCACACACAGGGACATACATGTGCATGCATACGCATGCACATGAACACACACATGTACATGCACACACATGCACATGCATCTACATGCACATGCCCATACACGCACACACACCACATGTGCACACACACAGGCACATACATGTGTGCACACACACATGCAACATGCACATACACACGCACACACAAGCATGCACACACACTCACACAGATGCACAAAGATACACACATGATGCACATGCACACACATGCATACTTGTACATGCACACATGCACACATGCATGTACCTGCATATGCATGTACACACACACACCACATGCATCCACACACATACATGCTACATGCACACACACATGCACACACACACACATACACTTACACATAATCCCACACACATGCACAGTGAGATGGGAGAGGAGAGAACTAAAAATATTCAAATAGAGCTGAAGCCACTACACGGCATGGGTACACTCATTCAAGCACACCTGTGCATACACATGTATACAGTGCTCACATACACAAATCAGTCGATAATGGACACGAACTATAGAAGAGCTCATCTTGTGTCATAGCACTAGGGTTCATCATGTGTGATGTGCAAAATTACATTAGGTTTTTTTTTTTTGTTTTTTTTGTTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAACTACCACATTAGGAATTGGTTATGTGTTTTGTTTTTTTTTCAAAG
Seq C2 exon
CTGGATACTCCTGTTATGGCCAAAGGCCCGGTAGAGATTTGGCTTCTCGACTTGTTAAAAGTACAGATGTCGTCATTACATAATATAATCCGGTCAGCCTTCTACCAGATCAGCGATTCGGGCTTTCTCCTTTTACCTTTCCTGAACCACTTCCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
NA
C2:
PF083938=DHC_N2=PD(9.0=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCTGCAGTGTCTGACAA
R:
CTGAGCAGGGAAGTGGTTCAG
Band lengths:
262-1640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]