RnoEX0028614 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9407255-9410021:+
Coord C1 exon
chr20:9407255-9407357
Coord A exon
chr20:9408377-9408481
Coord C2 exon
chr20:9409860-9410021
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTGTGTCTCTTGCAGCCA
3' ss Score
11.81
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GTATCTGGAAAAGAAACGACTGCTGTTTCCAAGATTCTTCTTTGTCTCCGATCCCGTTCTGCTGGAAATCCTTGGACAGGCCAGCGACTCCCATACCATTCAG
Seq A exon
CCACACCTCCCTGCAGTGTCTGACAACATCAATGAGGTGACATTTCATCCTAAAGACTATGATCGGATGACGGCCGTTATATCGAGAGAAGGAGAAAAAATCATG
Seq C2 exon
CTGGATACTCCTGTTATGGCCAAAGGCCCGGTAGAGATTTGGCTTCTCGACTTGTTAAAAGTACAGATGTCGTCATTACATAATATAATCCGGTCAGCCTTCTACCAGATCAGCGATTCGGGCTTTCTCCTTTTACCTTTCCTGAACCACTTCCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'64-69,'64-68,67-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=FE(8.2=100)
C2:
PF083938=DHC_N2=PD(9.0=68.5)
Main Skipping Isoform:
ENSRNOT00000000651fB4265
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACGACTGCTGTTTCCAAGA
R:
AGCAGGGAAGTGGTTCAGGAA
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]