HsaEX6047051 @ hg38
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein axonemal heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr6:38851572-38853347:+
Coord C1 exon
chr6:38851572-38851674
Coord A exon
chr6:38852694-38852798
Coord C2 exon
chr6:38853186-38853347
Length
105 bp
Sequences
Splice sites
3' ss Seq
CGTTTTCCTCTGTCTTACAGCCG
3' ss Score
10.55
5' ss Seq
GTTGTAATT
5' ss Score
-1.21
Exon sequences
Seq C1 exon
GTATTTGGAGAAGAAACGATTACTGTTTCCAAGATTCTTCTTTGTATCTGATCCAGTTCTCCTGGAAATTCTTGGACAAGCCAGTGATTCCCACACCATACAG
Seq A exon
CCGCATCTCCCTGCAGTATCTGACAACATCAATGAGGTGACATTTCATGCAAAAGACTATGATCGCATCATGGCCGTCATATCAAGAGAAGGAGAAAAAATTGTT
Seq C2 exon
TTGGATAATTCTGTTATGGCCAAAGGTCCTGTGGAGATTTGGCTACTGGATTTGTTAAAAATGCAGATGTCATCATTACATAATATAATTAGATCCGCTTTCTATCAAATCAGTGATTCAGGATTTCAACTCTTACCATTCCTCAGCCACTTTCCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'47-48,'47-47,49-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=FE(8.2=100)
C2:
PF083938=DHC_N2=PD(9.0=68.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGAAACGATTACTGTTTCCA
R:
GCTGGAAAGTGGCTGAGGAAT
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains