BtaEX6097357 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12671231-12673177:+
Coord C1 exon
chr23:12671231-12671333
Coord A exon
chr23:12672552-12672656
Coord C2 exon
chr23:12673016-12673177
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGTGCTCTCTTATAGCCA
3' ss Score
9.74
5' ss Seq
ATTGTAATT
5' ss Score
-0.94
Exon sequences
Seq C1 exon
GTATTTGGAGAAGAAGCGATTACTATTTCCAAGATTCTTCTTTGTGTCTGATCCAGTTCTCCTGGAAATTCTTGGACAAGCCAGTGATTCCCATACCATCCAG
Seq A exon
CCACATCTCCCTGCAGTGTCTGACAACATAAATGAGGTGACCTTTCATGCAAAAGACTACGATCGTATCATGGCTGTCATATCAAGAGAAGGAGAAAAAATCATT
Seq C2 exon
TTGGATAGTCCTGTTATGGCCAAAGGTCCCGTGGAGATTTGGCTTCTGGACCTATTAAAAATGCAGATGTCGTCATTGCATAATATAATTCGATCCGCATTCTATCAAATCAGTGATTCAGGATTTCAGCTGTTACCTTTCCTCAATCACTTTCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'50-51,'50-50,51-51=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=FE(8.2=100)
C2:
PF083938=DHC_N2=PD(9.0=68.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGAAGCGATTACTATTTCCA
R:
GTGCCGGAAAGTGATTGAGGA
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]