MmuEX6076585 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30863731-30866187:+
Coord C1 exon
chr17:30863731-30863833
Coord A exon
chr17:30865108-30865212
Coord C2 exon
chr17:30866026-30866187
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTGTGTCTCTTACAGCCA
3' ss Score
11.61
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GTATTTGGAAAAGAAGAGGTTGCTATTTCCAAGATTCTTCTTTGTCTCCGATCCGGTTCTGCTGGAAATCCTCGGACAGGCCAGCGACTCCCACACCATTCAG
Seq A exon
CCACATCTCCCTGCAGTGTCTGACAACATCAATGAGGTGACCTTCCATGCTAAAGACTACGATCGGATGACGGCCGTTATATCAAGAGAAGGAGAAAAAATCATG
Seq C2 exon
CTGGATACTCCCGTTATGGCCAAAGGGCCTGTAGAAATTTGGCTTCTGGACTTGTTAAAAGTACAGATGTCATCACTCCATAATATCATCCGGTCTGCCTTCTACCAGATCAGCGATTCGGGCTTTCTCCTCCTACCTTTCCTGAACCACTTCCCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'43-40,'43-39,44-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=FE(8.2=100)
C2:
PF083938=DHC_N2=PD(9.0=68.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGAAGAGGTTGCTATTTCCA
R:
GCTGGGAAGTGGTTCAGGAAA
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: