RnoEX0028613 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9407255-9408481:+
Coord C1 exon
chr20:9407255-9407357
Coord A exon
chr20:9407452-9407517
Coord C2 exon
chr20:9408377-9408481
Length
66 bp
Sequences
Splice sites
3' ss Seq
TAACTTCTTTGCGGTACAAGACA
3' ss Score
-0.9
5' ss Seq
GATGTGAGG
5' ss Score
4.17
Exon sequences
Seq C1 exon
GTATCTGGAAAAGAAACGACTGCTGTTTCCAAGATTCTTCTTTGTCTCCGATCCCGTTCTGCTGGAAATCCTTGGACAGGCCAGCGACTCCCATACCATTCAG
Seq A exon
ACAGGTCGGCTGAGACTCAGAAGCCCTGACAGTACAGCTGAGAGGTGACTCCATTGCTAAACAGAT
Seq C2 exon
CCACACCTCCCTGCAGTGTCTGACAACATCAATGAGGTGACATTTCATCCTAAAGACTATGATCGGATGACGGCCGTTATATCGAGAGAAGGAGAAAAAATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'64-68,'64-67,65-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.2=100)
A:
PF083938=DHC_N2=PD(0.3=6.2)
C2:
PF083938=DHC_N2=FE(8.2=100)
Main Inclusion Isoform:
ENSRNOT00000000651fB4265
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACGACTGCTGTTTCCAAGA
R:
GGCCGTCATCCGATCATAGTC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]