RnoEX0028631 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9403541-9408481:+
Coord C1 exon
chr20:9403541-9403694
Coord A exon
chr20:9405665-9405828
Coord C2 exon
chr20:9408377-9408481
Length
164 bp
Sequences
Splice sites
3' ss Seq
AACCACGGACTTGCTTTTAGGAA
3' ss Score
6.11
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATATAATACCCCGTTTAAGAAAACTATCCAGAATTGGGTCTATAAACTGTCCACCTCTTCGGATATCATAGAAGAGTGGCTGGTGGTCCAGAACCTGTGGGTCTACCTTGAAGCCGTCTTTGTGGGTGGCGACATTGCCAAACAGCTGCCCCAG
Seq A exon
GAAGCCAAACGTTTCCAGAATATCGACAAGTCGTGGGTAAAAATCATGCAGCGAGCTCACGAGAACCCCAACGTGATCAGCTGCTGTGTGGGGGATGAGACCATGGGGCAGCTCCTGCCTCATTTGCACGAGCAGTTGGAGGTCTGTCAGAAGTCCCTCACAGG
Seq C2 exon
CCACACCTCCCTGCAGTGTCTGACAACATCAATGAGGTGACATTTCATCCTAAAGACTATGATCGGATGACGGCCGTTATATCGAGAGAAGGAGAAAAAATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGTTTAAGAAAACTATCCAGA
R:
TCTCCTTCTCTCGATATAACGGCC
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]