HsaEX6047053 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38816424-38819450:+
Coord C1 exon
chr6:38816424-38816577
Coord A exon
chr6:38818027-38818190
Coord C2 exon
chr6:38819348-38819450
Length
164 bp
Sequences
Splice sites
3' ss Seq
GGCTATGGATGCATTTTCAGGAA
3' ss Score
5.67
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATACAATGCTCCATTTAAAAAAAATATCCAGAATTGGGTGTATAAATTGTCCACTTCCTCAGATATAATTGAAGAGTGGCTCGTAGTACAGAACCTTTGGGTTTATCTTGAAGCCGTCTTTGTAGGTGGAGATATTGCCAAACAGCTGCCTCAG
Seq A exon
GAAGCAAAACGTTTTCAGAATATTGACAAGTCTTGGATAAAAATAATGCAGCGAGCTCATGAGAATCCCAATGTGATTAATTGCTGTGTTGGAGATGAAACCATGGGACAACTTTTACCTCATTTACATGAGCAGTTGGAAGTATGTCAGAAGTCACTCACAGG
Seq C2 exon
GTATTTGGAGAAGAAACGATTACTGTTTCCAAGATTCTTCTTTGTATCTGATCCAGTTCTCCTGGAAATTCTTGGACAAGCCAGTGATTCCCACACCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'38-41,'38-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATTGGGTGTATAAATTGTCCA
R:
ATGGTGTGGGAATCACTGGCT
Band lengths:
226-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)