MmuEX6076587 @ mm10
Exon Skipping
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30722899-30726888:+
Coord C1 exon
chr17:30722899-30723052
Coord A exon
chr17:30725082-30725245
Coord C2 exon
chr17:30726786-30726888
Length
164 bp
Sequences
Splice sites
3' ss Seq
AACCACAAATTTGCTTTTAGGAA
3' ss Score
6.48
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATACAATACCCCGTTTAAAAAAAATATCCAGAATTGGGTCTTTAAATTGTCCACTTCCTCGGATATCATTGAAGAGTGGCTGATAGTCCAGAACCTGTGGGTCTATCTTGAAGCTGTCTTTGTGGGTGGCGACATTGCCAAACAGCTGCCGCAG
Seq A exon
GAAGCCAAGCGTTTCCAGAATATTGACAAGTCATGGATAAAGATCATGCAGCGAGCTCATGAGAACCCCAACGTGATCAGCTGCTGTGTCGGGGATGAGACCATGGGGCAGCTCCTGCCCCATTTACACGAGCAGTTGGAAGTCTGTCAGAAGTCCCTCACAGG
Seq C2 exon
GTATTTGGAAAAGAAGAGGTTGCTATTTCCAAGATTCTTCTTTGTCTCCGATCCGGTTCTGCTGGAAATCCTCGGACAGGCCAGCGACTCCCACACCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'63-77,'63-71,65-77=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATTGGGTCTTTAAATTGTCCA
R:
GAATGGTGTGGGAGTCGCTG
Band lengths:
228-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types