BtaEX6097359 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12668205-12671333:+
Coord C1 exon
chr23:12668205-12668358
Coord A exon
chr23:12669949-12670112
Coord C2 exon
chr23:12671231-12671333
Length
164 bp
Sequences
Splice sites
3' ss Seq
GACTATGGGTTTGTCTTTAGGAA
3' ss Score
8.83
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATATAATGCTCCATTTAAAAAAAATATTCAGAATTGGGTGTATAAATTGTCTACTTCCTCAGATATAATTGAAGAGTGGCTAGTAGTCCAGAACCTTTGGGTTTATCTTGAAGCTGTCTTTGTAGGTGGCGACATAGCCAAACAGCTACCACAG
Seq A exon
GAAGCAAAACGTTTTCAGAATATTGACAAGTCATGGATAAAGATAATGCAGCGAGCTCACGAGAATCCCAATGTGATTAGTTGCTGTGTTGGAGATGAAACCATGGGGCAGCTTTTACCTCATTTACACGAACAATTAGAAGTATGTCAGAAGTCACTTACAGG
Seq C2 exon
GTATTTGGAGAAGAAGCGATTACTATTTCCAAGATTCTTCTTTGTGTCTGATCCAGTTCTCCTGGAAATTCTTGGACAAGCCAGTGATTCCCATACCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'48-49,'48-48,49-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAATTGGGTGTATAAATTGTCT
R:
GGATGGTATGGGAATCACTGGC
Band lengths:
229-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]