MmuEX6076587 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30859844-30863833:+
Coord C1 exon
chr17:30859844-30859997
Coord A exon
chr17:30862027-30862190
Coord C2 exon
chr17:30863731-30863833
Length
164 bp
Sequences
Splice sites
3' ss Seq
AACCACAAATTTGCTTTTAGGAA
3' ss Score
6.48
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATACAATACCCCGTTTAAAAAAAATATCCAGAATTGGGTCTTTAAATTGTCCACTTCCTCGGATATCATTGAAGAGTGGCTGATAGTCCAGAACCTGTGGGTCTATCTTGAAGCTGTCTTTGTGGGTGGCGACATTGCCAAACAGCTGCCGCAG
Seq A exon
GAAGCCAAGCGTTTCCAGAATATTGACAAGTCATGGATAAAGATCATGCAGCGAGCTCATGAGAACCCCAACGTGATCAGCTGCTGTGTCGGGGATGAGACCATGGGGCAGCTCCTGCCCCATTTACACGAGCAGTTGGAAGTCTGTCAGAAGTCCCTCACAGG
Seq C2 exon
GTATTTGGAAAAGAAGAGGTTGCTATTTCCAAGATTCTTCTTTGTCTCCGATCCGGTTCTGCTGGAAATCCTCGGACAGGCCAGCGACTCCCACACCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'41-38,'41-37,42-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATTGGGTCTTTAAATTGTCCA
R:
GAATGGTGTGGGAGTCGCTG
Band lengths:
228-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: