BtaINT0050730 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12696554-12698950:+
Coord C1 exon
chr23:12696554-12696688
Coord A exon
chr23:12696689-12698788
Coord C2 exon
chr23:12698789-12698950
Length
2100 bp
Sequences
Splice sites
5' ss Seq
TTGGTATCT
5' ss Score
0.67
3' ss Seq
TTTATTCTTTGCCACCTTAGATT
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTTCATTATGACTTTGGGTTGAGAAATATTCTATCTGTATTGAGGACACTCGGATCTCAAAAAAGAGCCAGACCAGAAGATAGTGAATTAAGCACGGTCATGAGAGGACTGAGAGATATGAACCTTTCTAAATTG
Seq A exon
GTATCTTTATTTTCTGGGTTAATTTCTCTTTCAAGATTTTGACCTAGCTGACAAGTGGGGGTGGGCTCATACAGAGCTGTTAACATGAGTGTGTGTTGGGTTATGTATGTGAAGTTACCACTGACTGGGCTTCTGGAAGAAGGCACCCTCCTCCTGCCCCCAAGAAAAAAAATCCATGGCTTTATATGAACCACAGGGGCCAGAAATGCATCCTTGCAAATGCCATAAAATAGGCTCCATCAGTGGGCTCCAGCCCCCAAATGTCAGTCCATTACTCATAATGTAACACAGATTCTAAACATGAAAATCTGGATTCATAGGGAACCACCAGAGCTTTTTGCTTTGTCTGTATGTGACTAGCTTTAACTATGTCTCTGCCAAAACATCAACACCATTTCTATTTTCTAAATGTGCGTTAAATGGTGGCTGCTGCTGCTAAGTCACTTCAGAGTACTGGAGTGGGTTGTCATTGCCTTCAATGCATGGAAGTGAAAAGTGAAAGTGAAGTCACTCAGTCATGTCTGACTCTTCACGACCCCATGGACTGCAGCCCACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGCGCCATCGCCTTCTCCGGTTTGCTGTGGAGATTACAATAATTATTTCACTGCTTGCACACTTTTCACGGGTACAGCCATGTTGTCGTGAACTAGCTGATGGGCAGCTTCATGTGGCTTTTATTCAGGGGCTTCTTGGTGCTACGTGTCCGTGTCCTGGCAGTACACGGTTGAGGAAGGAGTGGACCTTAGGAGCTCACATTCTAGTTACAAAACTAACAACTAACATCTGCATACTTCACTTTATTACAGAATCTTTTCACGGGTACTGTCTTGTTTGAGTCTCACAGCCACCCTGGGGGGCGTGGATCTCCTTATGAGGGAGCCACGTTTGTAGGACTCACCCACCATCATAGTCAGTTGAGAAACTGAAAGCAAAATCCACAAGACTTTCTGATGTTAAACTACAGATATTTTCCTAATTAAAGTAGAATGTTAATACTCTGTTCTCTTGGGATTGGAGCTATTACTTACACGTTTTTAAGGTTAATGCATATACCTGTCGTATGATAAAGTAATGAGATCAAACCCTGGAGCAGTAGATTGGAGAAGACATTAAATGCCGACAGAGTGTTTTTTAAACATTTTGTCTTGGGGTATGGCCAATTAACAATGTTGTGACAGTTTCAGGTGAACAGCAAAGGGACTCAGTCATACATGTATATAAATCCTACTACTACTACTAAGTCGCATCAGTCGTGTCCGACTCTCTGTGACCCATAGACAGCAGCCCACCAGGCTTCCCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTAGCGACCCCATGGACTACAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAAAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGAATATAAATCCAGTTTCCACCAAACTTCCCTCCCGTCCAGGCTGCCACGTATTATTGAATAGAGTTCCCCGTGCTATAAAGCAGATCTTTTTATCCATTTTAGCTATCCATTTTAGTAATGTCTACGTGTCCATCCCAGACTCTAAGTATCCCTTCCCCCCATCCTCTCCTCCGCCCACCCTGGCAACCGTCCAGTTCATTCTCTAAGTCTGTGAGTCTCTTTCTGTTTTGTAAGTTCATTCCTATCATTTCCTTTTAGATTCCGCATATAAGAGAGATGTTTCCCCTTTATGTCTGACTTACTTCACTCAGTACAACAATCTCTGGGTCCATCCATGTTGCTGAAAATGGCATTATTTCATTCTTTTTAATGTAAATGCCAGGGAAATTTAGGTGCAATGCTGTAGGTAATGTGGACTCAGGGGTGGTGTTTGGGAGAAAGTGCTAGAGCATACAGGTGTGGCCAGGAGAATAATATGATTATTTGGGCATGAAATAAGTGCTATGAGCTTCATTTTTGACCTAAATGAGTAAATTTATTCTTTGCCACCTTAG
Seq C2 exon
ATTGATGAAGATGAACCCCTGTTCCTCAGCTTAATCAATGACCTGTTTCCAGGATTACAACTAGATAGTAATAGTTACGTGGAACTGCAAGCTGCAGTCACCAACCAGGTTCAGCTGGAAGGTTTGATTAACCATCCACCCTGGAATCTCAAACTCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]