MmuINT0051152 @ mm9
Intron Retention
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30879601-30881620:+
Coord C1 exon
chr17:30879601-30879735
Coord A exon
chr17:30879736-30881458
Coord C2 exon
chr17:30881459-30881620
Length
1723 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GCTCATGTCTGCCCTCCTAGGTT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GTCCACTATGACTTTGGACTGAGAAATATCCTGTCTGTGCTGAGGACCCTTGGGTCTCAGAAAAGAGCTCGGCCAGAAGACAGTGAGTTAAGCACGGTCATGAGAGGGCTACGAGACATGAACCTTTCTAAACTG
Seq A exon
GTAAGTATGAACTCAGATCTTGGTGTGTTTTGCCAACATATAGCGAGAGTGCCTCCCCTGTGGTTGTGTATGGTAAACCAGGGCCTCAGAGAGAGAGGGCTTCTGCTCCAAATTTCCAGTCCACTTTACCTTAAAGTTGTTTTTGAATTTAAAATTCTTATTTATGGTGTATGATTTCGTTCCTTGCATATGTGTTTATCCGTTTACCCTGTATGTGCATGAGTGCCCTTGGAGGAACTGGAATTAGGGTTGGTTGTGAGCCACCGACTGTGTGGTCCTCTGTGAGAGCAGCAAGTGCTCTTAACCACTGAGCCATCTCTCTAGCCCCCTTAAAAATTAAAATTTACATTGACGTATGTGTTCATGCACGTGCATGTGTGTAAATGCATGTGTGTAAATGCATGTGCAGAGTGCCACATCGTGAGTGTGGAACTCAGATGACAAGTTTTGGGAGTTGGTTTTTCTCCTACCAGGTGGCTCCCAGTGACTGAACTCAGGTTGTCTCGCTTAGCAACCAGTGTCTTTGTCCACCGTGTCATCTTAACAGCTCATCAATGTAGGTTTCTAGCATTGTCCACAGAGTGACAGATTCTAAGCATGAAGCTCTGGGCTCACAAGGAACTATGAGAACTCTATGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATGCTTACATGGGTCGGAGGAGGGTGTCAGATCATTGTGTGGTGTGTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGCCTGTGTGTGTGTCTTTGTGTCTGTGAGTGTGTGTCTCTCTGAGTGTGCCTATGTGTGTGTATGTATGTATGTGTGTGAGTGTATGAGTGTCTATGTGTTTGTATATGTGTGAGTATATGTGTGTAAATGTGTATGAGCATGCGTGTGTGTGACTGTGAGTGTGTCAGTATTAGTGTGGAGTGTGCATATGTGTAAATGTGTGTGTGAGTGTGCATATGTATGTTTGACTGAGTGTGTGAGATAAGTGAGGTGTGTGTGTGTGTGATATGTGCATGTGTGTGTGTGTGTGTTTGGGGGGTTGGAGTACTCAGTGATTAAGAATACTTGCTGCTCTTCCAACAGATCGGAGTTCAGTTTCTAGCACCCATGCCAAGTGGCTCCAAACTGCCAACTCTAGCTCCAGGGGGTGTGGGGTGGGGAAATCCTACGCCCCCTTCTGGCGTCTGTGGGTAACTGCACTCATGTCTACATATCCACACATAGTCACAGACACATACATAAAAATAAATCATAAAATAAAAAGTACTGAGGGAGCTCCAGTGGATAGAAGAAGTTGAGAAGGGACTGGAAGTTGGGAACACAGCCATCTGTGTATTAAAGACACAGCACACCAAGTGTTGGGGGAGGGGGTCAGCTTACGCAAACCTACTCCTTAAAGATAAAGACAGGATGCTGATTGGATAGAGATTTCCAGCCACTGTGGGATTAAGTCACCGGGGGCAGGGTGCATATGTCCTACTTAGCTAAGAGACAACTGTTGACTGAGTACGCTTGTGCTCATGTCTGCCCTCCTAG
Seq C2 exon
GTTGACGAAGATGAGCCTCTGTTCCTCAGCTTGATCAACGACCTGTTTCCGGGGTTACAACTGGACAGCAGTACTTACGCGGAACTGCAATCCGCGGTGGACAACCAGGTTAACCTAGAAGGTCTGATAAACCACCCACCCTGGAACCTCAAATTAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-Dnahc8:NM_013811:48
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACTATGACTTTGGACTGAGA
R:
GCACTAATTTGAGGTTCCAGGGT
Band lengths:
295-2018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: