GgaINT0087325 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30668821-30669730:-
Coord C1 exon
chr3:30669596-30669730
Coord A exon
chr3:30668983-30669595
Coord C2 exon
chr3:30668821-30668982
Length
613 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ACACTGAATAACTTTTTCAGATA
3' ss Score
6.33
Exon sequences
Seq C1 exon
GTTCATTATGACTTTGGTCTGAGGAACATCCTTTCAGTACTTAGGACTCTTGGAACTCAAAAAAGGGCCAGACCAAATGATAGTGAATTAAGCATTGTTATGAGGGGACTAAGAGATATGAATCTTTCAAAGCTG
Seq A exon
GTAAGAATCTAATTGAAGATTTTAGCACCAAAATAAGCAGAGCAGCTAGTCATAACTGTGTTATAATTAAGCAGCAGTGAGCATTCACTAATCCTGAAAACAGTTATTGGAGTGCAAAGATTCAACTGAGTTAACAGTGGTTTGTCTGGGGGTATGATACTTTACATACTAATGGATATAGACTGATTACGATCAATAAAAGGAATAATTTGAATATGAATTAAGTATATGTGCCATAAATTTAGTGTATGTACCAAATCTGCAGGGTATGATATCCAGCAGGGATGAGAAATCTCTTTAACACATTTTTTAAAGTTTTTATAGGTGCTCTTTAAGCATTAGAATTGAAAGATCATAAGCTTTATAAGTATAGATTCAGTGTGTACTGAGTGAGAAATGAAATAAATTTCAAATTTATGTTTCAAATGACATACAGATGACATTATGAAAATGCCGTCAGCTTAGTGAGCTGTCCTGTTGGCTGACTGTGCTTATGAACGCAAGCACCTGTATTTAAAAACTATATTCTTATTGTTTAATATTTTACAGTAGATATCAGTTTGGGTTTAAGAACTGTTGATAACTGGGCTTTAACACTGAATAACTTTTTCAG
Seq C2 exon
ATAGATGAAGATGAGCCCTTGTTTCTCAGTCTTATCAATGATCTGTTTCCGGGGTTGCAGTTGGACAGTAATAAATACAATGAGCTTCAGGCTGCAGTAGCTAATCAGGTTGAAGAGGCAGGATTGACTAATCATCCACCATGGAATCTTAAGCTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATTATGACTTTGGTCTGAGGA
R:
AACAAGCTTAAGATTCCATGGTGGA
Band lengths:
294-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]