BtaINT0050731 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12698789-12702659:+
Coord C1 exon
chr23:12698789-12698950
Coord A exon
chr23:12698951-12702412
Coord C2 exon
chr23:12702413-12702659
Length
3462 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTGATCATCTCATTGTGTAGTTG
3' ss Score
5.32
Exon sequences
Seq C1 exon
ATTGATGAAGATGAACCCCTGTTCCTCAGCTTAATCAATGACCTGTTTCCAGGATTACAACTAGATAGTAATAGTTACGTGGAACTGCAAGCTGCAGTCACCAACCAGGTTCAGCTGGAAGGTTTGATTAACCATCCACCCTGGAATCTCAAACTCGTGCAG
Seq A exon
GTAAAATATTTTTCATCTATTATCAGTATGATGCTCAATGAGTGTTGTTAGAGGTTGTCATTTGGAGAGAAGAACTTGTGATATTAGTCTTGCTTGATGTTAAGGTTGAGACTAAATAAAGCACATCATTACAAGAAGAGTCCTCAGCTGGGGATGTTAGTCCTAAGGACTTTAGTGTGGTTTTACCCTGCTTCACACTAACCAAGCACTTACTGAAGTTACTTACACCCCATGACGTTAAGTGGTAACCAGAATCTTGAGAATAGCTGGTAGGAGATAGTAGATTATGAAAATGCAGGGAGGGACTTCCCTGGTGGTCCCGTAGTTGGGACTCTGTGTTTCCACTGCAGGGGCCTTGGGTTCCATTCTTGGTTGGGGAACTGGAATCTCACGAGCCATGCAGCATGACCAAAAAAAAAAAAAAAAACCCACAGGGAAATGGAATGCCATAGCTGGGGGCCTTCATGGGGCATGGAGCCCAAGGAATCTGGGGCTGCTACCCTGCTTCTGCTTCGTATGTGGGCGTGTTCACACCTAAACTAAATCCTTTGCCCGTGTCTCTTGGTGTGTTTCTGTCAATTACATTTTATCCTTGTGACAACCTATCAGTGATTTTATCAAGCAGATCCCTGAAACTGTTGCAGAGTTGCTGAATTAAATCCCTATGAGCTTGACACATTGAGAGTATTTTCCAGTGCCTTGGAAAATGAAGGCATTGAAATTGTGGAAAGTGTCAAAACTGCATTTGAAAAGTAATGATTCTTAACTTATTCTTTTAACCAGTGCAAGTGTATGAGACAGATTCAAATCTTAGAAAGAAAATATATTGGGAGAAATCAACGTATTTTTCATCATCTATGTAATGGAAATCATTCCATTTAAAAAAAATTCTGGGAAAACCTCACTTTACATGTGATGTGCATACAGGTGAATTGAGAACTTCAGATGTACAAGCTGGATTTAGAAAAGGTAGAGGAACCAGAGGTCAAGTTGCCAACATCCACTATATGATAGAAAAGCAAGGGAATTAAAAAAAAAAAAATCTACTTCTGCTTCATTGACCATGCTAGCACTTTTGACTGTATGAATCACAACAAACTGTGGAAAATTCTTAAAGAGATGGGAATACCAGACCACCTTATCTTCCTCCCGAAAAACCTGCATGCAAGACAAGAAGCAAGAGTTAGAATCAGATATGGAACAATGGCCTGGTTCAAAATTGGGAAAGGAGTACATCAAGGCTATATATTGTCACCCTGCTTACTTAACTTCTATGCAGAGTACATCATGAAAAATGCCAGGCTGGATAAAGCACAAGATGGAATCAAGATTTCCAGGAGAAATATCAATAACCTCAGATATGCAGATGACATATGTCTAATGGTAGAAAGTGAAGAGGAATTAAAGACCTTCTTAATGAGGGTGCAAGTGGAGAGTAAAAAAGCTGGCTTAAAACCCAACATTCAGAAAACTAAGATCATCACATCCGGTCCCATCACTTCATGGCAAATAGATGGGGGGAAAGTGGAAACAGTGACAGATTTTATTTTCTTGGGCTCCAAAATCACTGTGGACAGTGACTTGCAGCCATGAAAGTAAAAGATGCTTGTTCCTTGGAAGAAAAGCAATGACAAACCTAGACAGCATATTAAAAAGCAGAGACATCACTTTGCTGAAAAAGGTCTGTATAGTCAAAGCTATGGTTTTGCCAGTAGTCATAAAGGATGTGAGAACTGGACCATAAAGAAGACTGAGCACTGAAGAATTTATGCTTTTGAACTATGGTACTAGAGAAGGCTCTTGAGAGTCTCTTGGATAGCAAGGAGATCAAACCAGTCAATCCTAAAGGAAATCAACCCTGAGTATTCATTGAAAGGACTGATGGTGAAGCTCCAATACTTTGGCCACCTGATGCAAGAGCTGACTCATTTTAAAAGCCCCTGATGCTGAGAAAGATGGAGAGCAAGAGGAGAAGGGGGTGAGAGAGGATGAGATGGTTGGATGGCATCACTGACTCAATGGACATGAGTTTGAGCAAACTCAGGGAGATAGTGAAAGACAGAGAAGCCTGGTGTGTTGCAGTTCATGAGGGCGCAGAGTCGGACATGACTTAGCCACTGAACAACAATGCACACAGTATACTGAGCACTGAAATCTTAGTTCTCTCAGTTGGTGGGGGACTAGAATATTGTGTTGTTACTTAATGTCAAACACATTACTGTTGAATATAATATGGCCAGTACCTCTGTTGCTTTTAAACTATGGATTACAGAGCTAATACATTTCTATCTAAAACTTAGGAAAGTAACTCAAATTTTACTCTGATCAGCTATGAGACCTTTGACTTTTTGTTTTCATTAAGAAAACTGTAGAGAGGACTTTGTAACAGACACTGTCCATGTTCTTTGTATGTCTCCTTGAATCTCTCTTACCTCAACCTTGCACTCCTTCCCTGACTTCTAGAACTGTGATTCCAATCCCAAACACACCACTCTCTGCAGGAGGGTCAGTGCCACTTTTTCTGGAAGGTGCAAAGTGCAGACAGCGCATGGGAGTTTTTTCTCCCCTACCCCCAAACAACCCTTCCTTAGTTAAGGACATATGGTTGATGTGGGGAATTCCCTGGTGGTCTAGTGGTTAATACTATGCATTCCCAATGCAGGGGGCCTGGGTTTGATCCCTGGTTAGGGAACTTGATCCTGCATGCTGCAACTAAGAGCTGGCACAGCCAAATAAATAATTAAAAAAAAAAACAAACCAACAGAACACTCGATAAAGACTTATGGGTGATGCAGTCAAAAAGTCAAGTTCTCCTGCTTCCAGTTGAAACAGGTATAAAGGTGCCCCGAGGGCCAGCCTTAAGTCTCCCCTCTACAGGATTTTTGTCTTCAGTCACACCACGCTTGACCTGTCCCCGTTCCTGTCCTTCCCTTACTCCATTACAAGTTTCCCTGATGATCACTCGCTTGTACAGGAAACTCAACGTCCAGCTGTGCCTCTGGAGAACCAGAAGGCTGATGTTTAACTTGGGTCTTGGCAGAGATGCTGTGTATCGCTGCTTTCCACCACTAGGGGGCGGTATCACCACACGTGATACAGAGAAAGCCTGTTTGTGGAAAAACCACTTCTATGTTATCAGCAAACTGAAATGACAAGGAGTTTGTCATATCAAGTAGTTTGAGACGCAAAAACTAGATCCTGAATTGATTACTTCCAAAATGTAATTAAAGTCCCACATTGTCATCACTTTCTCACTTTTAACGTTTTAAAAGTTTGCTACTCACCTTCCATGAAACAAACAGTTTTGGAGGGGTCATATTCCATTTTTAAGTACTGAACCAGTTACTATCTAAAGCTTTTAAGATCCTGTTTAAAGCTTTTAAAATTTCTTCACATGACTTCTATGAACGTGTGCAGGAGACTCCTAAGTTATATTTTTTGATTGATCATCTCATTGTGTAG
Seq C2 exon
TTGTATGAGACGTCTCTGGTCCGTCATGGTTTGATGACTCTTGGGCCCAGCGGGTCTGGGAAGACAATGGTCATAACAATCCTGATGAAGGCACTGACAGAGTGTGGAAGGCCTCACAGGGAAATGAGAATGAATCCCAAAGCTATTACGGCTCCTCAGATGTTTGGCCGACTGGACACAGCGACCAATGACTGGACAGACGGGATTTTTTCTACTCTGTGGAGAAAAACATTAAAAGCTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]