GgaINT0087326 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30666816-30668982:-
Coord C1 exon
chr3:30668821-30668982
Coord A exon
chr3:30667063-30668820
Coord C2 exon
chr3:30666816-30667062
Length
1758 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
AACATTTTGCTTTTTAATAGTTG
3' ss Score
6.32
Exon sequences
Seq C1 exon
ATAGATGAAGATGAGCCCTTGTTTCTCAGTCTTATCAATGATCTGTTTCCGGGGTTGCAGTTGGACAGTAATAAATACAATGAGCTTCAGGCTGCAGTAGCTAATCAGGTTGAAGAGGCAGGATTGACTAATCATCCACCATGGAATCTTAAGCTTGTTCAG
Seq A exon
GTAAAAAAAAAAAATAAAAAAAAAAATCTAATGTCTTCGTAGCAAATGCAAGTCAGAACACCATGTTAGTGGTTAAATCACTGTCTCATTCAAAGACTTGTGCTGCTTGTATAAGAATAAAGTAAAAGCTGAATGTAAACCACACTGGGAAGACTAAACTATTATTTATTTATATCCAGAAAAAGAAAAGGAAAAAAAAACAACACCTTATAGAATGCTGCTAACCCAGCCTTTCCCATATATTTTTAGTGCATCTGTTATCTGTTAGTGCATTTAGTTATCTGAATGAAGAAGAAAAGTATGTATTTAGCTCTCTAAACATGAGTTTCGTAGGCTAGAGTAGGGGCAGTAGGGCATAAGAATGCATTTTGAAGGCCAAGGCAGTAAATAAAATGTAACAAAAATAGCCAGGTCGCAACTTCTACAGCGTAGAAGCTAAGAGCTAAAAGAGCTATCACAGGACAAAGAAAAATATAAGGGGTATGTATTTGTATACTTGAACAGATATTGTAGTAGACGAATACTTTCTCACATAAGTGTTAAGAACCTGTATTCTGGTTGAGTAATCATCCAGTTTATATATATTGGGTTTAAAGAAACAAAGTGTAAGGATGTGTAGAGGCCTCAGACAGTATTAGTGTATGTTACTGCAACCTTACGTAAACCTATGACAAGGTTAATTATGCAAATGAGCAAGCTGGAAGTGCTATAAAAGGAAAGAACCAAAGGAGCAAATATGAATGAACTGTGACTTTCAAGAACATATGTGGTTGAATGGTTAAAGCTATGAAGAGACTTGGAGGTTTTCTAGACATTAAATGTGAACCAGCCTGACTACTGTCAATTTGTGTCCATAGTGTTCAAAGCTAGCTTTTTCTGAGGTACATGAGCCAGGTGAATATTGTGGAAAGACCGCACCTATGTGCAATATGTATCCCTGTTACCCGAATGCAGCGTTATTAGTAAAAATGAGTAAGAAAACTTTAGCATCTGAATGGGAGATGTTATATAATTGTTGGCAAAAAATGTTGCCTACAAGCAACACAGAAGTTGTATAATTTTGACATAATATTTTGTTCTTGGCATTTAAGGAATTGAAAGACAGACCCTATACATTGCCAGGTTGCTTGGACTGTTGTAGCGTAGTATGTTTTGTTTGCTTTATATTGCATGCTCTTTAGACCTAAACTACATTCTGACTGCAAAGCAGAAGACCTGAGGTGTTCCAAGGAATTACTTACTTTGTCTCTGGAACATTTGTATGACGTGATGTTTAGTAAACTTGTGATTTAATAGTTAAACTATAATTTTGGACTATAGTAACTTGTACATAAAAACTTCAAGGAGGTCCTTTAAGTATTAGATTTGTTAAACAGTTGAGTGGCCTTATAAAATGCTATAGGAAGTGTTGTATCTGTTTACTTCATGTACTTAAGATGCTTTAGCACTTTCATGATTATACATTCTTGTGTTAAATGTTTTGCTACTATTCATTTTTTTCCTTTTGAGTAATACAGAAAAAGGCTACATTTAGTTCTGTAAGCCATTTTATAGTAAATTTGTTTGGTGTTTAATAGATAAGGATACAAAAGTATGTACAGTTCCTCAAAATGCTACAAATAAGCAAATACAAGCTGATTTCTGAGTTCCTGATCTTGAATGTCTAATGTATTCATAATCTGTGACTATCAAACATGCATAAGTTTGAGGAAAAATCTTCCAAAAGCATATTTTTCAAAACATTTTGCTTTTTAATAG
Seq C2 exon
TTGTATGAAACTTCTTTAGTACGTCATGGGCTGATGACACTTGGACCCAGTGGATCTGGAAAAACGATGGTCATAACTATATTAATGAAAGCACTGACAGAATGCGGACAACCTCATAGAGAAATGCGAATGAATCCCAAAGCTATTACAGCTCCTCAGATGTTTGGAAAACTAGATGCTGCAACTAATGATTGGACAGATGGAATATTTTCTACACTGTGGAGGAAAACATTGAAAGCTAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTTGCAGTTGGACAGTAA
R:
GCTTTCAATGTTTTCCTCCACAGT
Band lengths:
351-2109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]