RnoINT0049195 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9426713-9428561:+
Coord C1 exon
chr20:9426713-9426874
Coord A exon
chr20:9426875-9428314
Coord C2 exon
chr20:9428315-9428561
Length
1440 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTGTCATTCGGTGGTGCAGTTA
3' ss Score
4.46
Exon sequences
Seq C1 exon
GTTGATGAAGATGAGCCCTTGTTCCTCAGCTTGATCAACGACCTGTTTCCGGGTTTACAACTGGACAGCAATACTTATGCGGAACTGCAGGCCGCGGTGGACAACCAGGTTAACCTAGAAGGTCTGATTAACCACCCACCCTGGAATCTCAAATTAGTGCAG
Seq A exon
GTAAGGGCACCAGAAGCCCCCGGCATGTGCCTGCCAGAGGTCACGATGTCAGCTCTCACCCCACCACACTTACTGGATGTGAATGTTGACACCGAGTTAAAATGCCGTATCCCTGTCCCCCACGGGACGAATCCTCAGGGGCTTGTGTTTCTCTTAGAAAAGAACGATTTTGCCCTGTCATGCGGCAATCAGGCGGTCACTTAGTCTAGCTGTCCCTTAAGCCTCCTGAGAAGGTTGATTTAGGTAAGCAGAGTCTATGACAGTTGGGGAGTTACAGCCTAGCTGGTTCCTTGCTGTCTCTCTGGCAGTATTACCTGCAGCTGACACCTCAGGGGTGACACCCTCAAGCCTGAGGAACCTGAGTCTTCTCCTTTGCTTGTGTGTGTGTGTACGCATGTGCACACATATATGTGTGTGTATGTGTGTGTGTGTGTGTGAATGTGTGAGTGTAAGATGTGTTATGGCTTGAGAATATTAGATCTATAGCCCAGGCTGGCCTAGGATTTGCTATGTAGTCGAGGATGGCCCTGACCTGTTGATCCTTCTGCTTGTCTCGAGTGCTGGGATTATAGACGCACACCACCTTATACTGAGTATCCGAAGCCAACAGCTTCATGACTCTGGGCCCTCAGCCCTCCCTGACTGAGCTATGTCTACAGCCCACTGTCTGCTGTGCTCTCAGTATGTCTCCTTAAATCCCCTCTCCCATTCCCGCGTGCCCAGCTCCCGTCTGCTGCTGCTGTGTGTAGCAAGTGGAGGACGGAGGCCACTTTGTGTGTGGGCACAGGGGGCAGGCCTTGCCCGAGCACTTATCCCTCCCAAGCACCATCCCCTCAAGGAAGGATGGCTGGGGGAGGGGATGGGAAGGCCAAGCTCCCCCGACTCAGATGGGGGTGGGGGCCTGTGGGGATCACACTTGTCTGCCTGCTGGGGCTGCCCTCCGTTGCACCTTACTCGGCTCTTCTAATCCCTGGCAATGTTCTCTCCACGCCTTTCTTTGTATCCCCCAAGGGCTCTCTCCAAATAAATCACTTCCACACAAAATCTTTTTGTAAGCTGCGCCTCCGGAGACCCAGAAGGCCCAGGGTCACCCTGGAACTTTACAGAGATGCTATGCGCTACCGCTTTCCACCACCGGGGGGCGACATCACCACCCACCACACCACCCCCCCACCCCCCCCCCCACACATATACCCATCTCACGAGGCAGAAAGCTGATCCTGAATTACTTGCCAGCTGTAATTCAAGTCCCACGCCGTCATTACGTTACCGTTTATGTTGTTTTTTTTTTAAATGTGATGCTAGTTTTTGCCTCCCGAATCCAGTAAAACAAAGAACACTTGGATGCTATTTAAAGCCTTTAAAATCTCAGCCAACTTACACAAACAACAGCCAGAGACTAATAACCTGCGTTTTCCAATGTGTCATTCGGTGGTGCAG
Seq C2 exon
TTATATGAGACCTCTCTGGTACGGCACGGCCTGATGACCCTCGGGCCAAACAGTTCCGGGAAGACGACGGTCATAACAATTCTGATGAAGTCATTAACGGAGTGCGGGAGGCCCCACAGAGAGATGCGAATGAACCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCCGGCTGGACACAGCCACCAACGACTGGACAGATGGGATCTTCTCCACCCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTTGTTCCTCAGCTTG
R:
AGATCCCATCTGTCCAGTCGT
Band lengths:
358-1798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]