RnoEX0028633 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9426713-9428929:+
Coord C1 exon
chr20:9426713-9426874
Coord A exon
chr20:9428315-9428561
Coord C2 exon
chr20:9428688-9428929
Length
247 bp
Sequences
Splice sites
3' ss Seq
TGTGTCATTCGGTGGTGCAGTTA
3' ss Score
4.46
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTTGATGAAGATGAGCCCTTGTTCCTCAGCTTGATCAACGACCTGTTTCCGGGTTTACAACTGGACAGCAATACTTATGCGGAACTGCAGGCCGCGGTGGACAACCAGGTTAACCTAGAAGGTCTGATTAACCACCCACCCTGGAATCTCAAATTAGTGCAG
Seq A exon
TTATATGAGACCTCTCTGGTACGGCACGGCCTGATGACCCTCGGGCCAAACAGTTCCGGGAAGACGACGGTCATAACAATTCTGATGAAGTCATTAACGGAGTGCGGGAGGCCCCACAGAGAGATGCGAATGAACCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCCGGCTGGACACAGCCACCAACGACTGGACAGATGGGATCTTCTCCACCCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
Seq C2 exon
GTGAAAACATCTTCCTCATCTTAGATGGCCCCGTGGATGCCATTTGGATCGAAAACCTAAACTCTGTGCTAGACGACAACAAGACACTCACCCTGGCCAATGGGGACCGCATTCCCATGGCCCCGACCTGTAAGCTGCTGTTTGAGGTGCACAACATTGAGAACGCGTCCCCCGCCACGGTGTCGAGGATGGGTATGGTGTACATCAGCAGTTCGGCTCTCAGCTGGAGGCCGATATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542_MULTIEX2-1/3=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(53.3=88.0)
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCCCTTGTTCCTCAGC
R:
AAACAGCAGCTTACAGGTCGG
Band lengths:
296-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]