GgaEX6029632 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28795750-28799287:-
Coord C1 exon
chr3:28799126-28799287
Coord A exon
chr3:28797121-28797367
Coord C2 exon
chr3:28795750-28795991
Length
247 bp
Sequences
Splice sites
3' ss Seq
AACATTTTGCTTTTTAATAGTTG
3' ss Score
6.32
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATAGATGAAGATGAGCCCTTGTTTCTCAGTCTTATCAATGATCTGTTTCCGGGGTTGCAGTTGGACAGTAATAAATACAATGAGCTTCAGGCTGCAGTAGCTAATCAGGTTGAAGAGGCAGGATTGACTAATCATCCACCATGGAATCTTAAGCTTGTTCAG
Seq A exon
TTGTATGAAACTTCTTTAGTACGTCATGGGCTGATGACACTTGGACCCAGTGGATCTGGAAAAACGATGGTCATAACTATATTAATGAAAGCACTGACAGAATGCGGACAACCTCATAGAGAAATGCGAATGAATCCCAAAGCTATTACAGCTCCTCAGATGTTTGGAAAACTAGATGCTGCAACTAATGATTGGACAGATGGAATATTTTCTACACTGTGGAGGAAAACATTGAAAGCTAAAAAGG
Seq C2 exon
GTGAAAATGTGTTTCTGGTTTTAGATGGTCCTGTAGATGCAATCTGGATTGAGAATCTAAATTCAGTTTTGGATGATAACAAGACTCTCACTCTAGCAAATGGAGATCGAATTCCCATGTCTCCTACTTGTAAGCTGTTATTTGAAGTCCACAACATTGAGAATGCTTCTCCAGCAACAGTTTCTCGTATGGGTATGGTCTACATCAGCTCTTCTGCCCTTAGCTGGAGACCAATATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.072 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(53.3=88.0)
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGAAGAGGCAGGATTGA
R:
ATTGGTCTCCAGCTAAGGGCA
Band lengths:
292-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]