MmuEX0015097 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30881459-30884333:+
Coord C1 exon
chr17:30881459-30881620
Coord A exon
chr17:30883703-30883949
Coord C2 exon
chr17:30884092-30884333
Length
247 bp
Sequences
Splice sites
3' ss Seq
TGTGTCATTTGATGGTGTAGTTA
3' ss Score
4.65
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTTGACGAAGATGAGCCTCTGTTCCTCAGCTTGATCAACGACCTGTTTCCGGGGTTACAACTGGACAGCAGTACTTACGCGGAACTGCAATCCGCGGTGGACAACCAGGTTAACCTAGAAGGTCTGATAAACCACCCACCCTGGAACCTCAAATTAGTGCAG
Seq A exon
TTATATGAGACCTCTCTGGTACGGCATGGCCTGATGACCCTCGGGCCCAGCGGTTCTGGGAAGACGACGGTCATAACAATTCTGATGAAATCATTAACGGAGTGTGGGAGGCCTCACAGAGAGATGCGAATGAATCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCAGGCTGGATACAGCCACCAACGACTGGACAGATGGGATCTTTTCCACTCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
Seq C2 exon
GTGAGAACATCTTCCTCATCCTAGACGGCCCCGTGGATGCCATCTGGATTGAGAACTTAAACTCCGTGTTGGACGATAACAAGACGCTCACCCTGGCTAACGGGGACCGCATCCCCATGGCCCCTACCTGTAAGCTGCTGTTTGAGGTGCACAACATTGAGAACGCCTCTCCTGCCACGGTGTCAAGGATGGGCATGGTATACATCAGCAGCTCGGCTCTCAGCTGGAGGCCGATATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'53-50,'53-49,54-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(53.3=88.0)
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCCTCTGTTCCTCAGCT
R:
TGTTGTGCACCTCAAACAGCA
Band lengths:
308-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: