BtaEX6097347 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12698789-12703027:+
Coord C1 exon
chr23:12698789-12698950
Coord A exon
chr23:12702413-12702659
Coord C2 exon
chr23:12702786-12703027
Length
247 bp
Sequences
Splice sites
3' ss Seq
TTGATCATCTCATTGTGTAGTTG
3' ss Score
5.32
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
ATTGATGAAGATGAACCCCTGTTCCTCAGCTTAATCAATGACCTGTTTCCAGGATTACAACTAGATAGTAATAGTTACGTGGAACTGCAAGCTGCAGTCACCAACCAGGTTCAGCTGGAAGGTTTGATTAACCATCCACCCTGGAATCTCAAACTCGTGCAG
Seq A exon
TTGTATGAGACGTCTCTGGTCCGTCATGGTTTGATGACTCTTGGGCCCAGCGGGTCTGGGAAGACAATGGTCATAACAATCCTGATGAAGGCACTGACAGAGTGTGGAAGGCCTCACAGGGAAATGAGAATGAATCCCAAAGCTATTACGGCTCCTCAGATGTTTGGCCGACTGGACACAGCGACCAATGACTGGACAGACGGGATTTTTTCTACTCTGTGGAGAAAAACATTAAAAGCTAAAAAAG
Seq C2 exon
GTGAAAACATTTTCCTCGTTTTAGATGGCCCTGTGGATGCCATTTGGATTGAGAACTTAAATTCCGTGTTGGATGACAATAAAACCCTCACACTGGCCAACGGAGATCGCATCCCCATGGCCCCAAGCTGCAAGCTTTTGTTTGAAGTCCACAATATCGAGAACGCCTCTCCAGCCACGGTTTCTAGGATGGGCATGGTGTACATCAGCAGCTCTGCCCTCAGCTGGAGACCAATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'60-61,'60-60,61-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.072 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(53.3=88.0)
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAGGTTCAGCTGGAAGG
R:
AGGATTGGTCTCCAGCTGAGG
Band lengths:
299-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]