RnoEX0028634 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9428315-9429411:+
Coord C1 exon
chr20:9428315-9428561
Coord A exon
chr20:9428688-9428929
Coord C2 exon
chr20:9429271-9429411
Length
242 bp
Sequences
Splice sites
3' ss Seq
CCATGCATCCTTGTTTTCAGGTG
3' ss Score
9.25
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
TTATATGAGACCTCTCTGGTACGGCACGGCCTGATGACCCTCGGGCCAAACAGTTCCGGGAAGACGACGGTCATAACAATTCTGATGAAGTCATTAACGGAGTGCGGGAGGCCCCACAGAGAGATGCGAATGAACCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCCGGCTGGACACAGCCACCAACGACTGGACAGATGGGATCTTCTCCACCCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
Seq A exon
GTGAAAACATCTTCCTCATCTTAGATGGCCCCGTGGATGCCATTTGGATCGAAAACCTAAACTCTGTGCTAGACGACAACAAGACACTCACCCTGGCCAATGGGGACCGCATTCCCATGGCCCCGACCTGTAAGCTGCTGTTTGAGGTGCACAACATTGAGAACGCGTCCCCCGCCACGGTGTCGAGGATGGGTATGGTGTACATCAGCAGTTCGGCTCTCAGCTGGAGGCCGATATTACAG
Seq C2 exon
GCATGGCTGAAGAGGCGTACCCAGCAGGAAGCCACTGCCTTCTTGAGTCTGTACGACAAGGTGTTTGAAGACGCGTACACATACATGAAACTCAACCTCATCCCCAAGATGCAGCTCCTGGAGTGTAATTACATCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542_MULTIEX2-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(53.3=88.0)
A:
PF077289=AAA_5=PD(46.0=77.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGACCCTCGGGCCAAA
R:
ACGCGTCTTCAAACACCTTGT
Band lengths:
293-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]