MmuEX6076576 @ mm10
Exon Skipping
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30746758-30747987:+
Coord C1 exon
chr17:30746758-30747004
Coord A exon
chr17:30747147-30747388
Coord C2 exon
chr17:30747847-30747987
Length
242 bp
Sequences
Splice sites
3' ss Seq
CTTCCCGTCCTCATTTGCAGGTG
3' ss Score
12.78
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
TTATATGAGACCTCTCTGGTACGGCATGGCCTGATGACCCTCGGGCCCAGCGGTTCTGGGAAGACGACGGTCATAACAATTCTGATGAAATCATTAACGGAGTGTGGGAGGCCTCACAGAGAGATGCGAATGAATCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCAGGCTGGATACAGCCACCAACGACTGGACAGATGGGATCTTTTCCACTCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
Seq A exon
GTGAGAACATCTTCCTCATCCTAGACGGCCCCGTGGATGCCATCTGGATTGAGAACTTAAACTCCGTGTTGGACGATAACAAGACGCTCACCCTGGCTAACGGGGACCGCATCCCCATGGCCCCTACCTGTAAGCTGCTGTTTGAGGTGCACAACATTGAGAACGCCTCTCCTGCCACGGTGTCAAGGATGGGCATGGTATACATCAGCAGCTCGGCTCTCAGCTGGAGGCCGATATTACAG
Seq C2 exon
GCATGGTTGAAGAAGCGCAGCCAGCAGGAAGCCTCCGTCTTCCTGAGTCTGTATGATAAGGTGTTTGAAGACGCATACACGTACATGAAACTAAGCCTCAACCCCAAGATGCAGCTCCTGGAGTGTAATTACATCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'79-92,'79-90,81-92=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(53.3=88.0)
A:
PF077289=AAA_5=PD(46.0=77.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGAAGACGACGGTCAT
R:
GCATCTTGGGGTTGAGGCTTA
Band lengths:
306-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types