BtaEX6097346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12702413-12703271:+
Coord C1 exon
chr23:12702413-12702659
Coord A exon
chr23:12702786-12703027
Coord C2 exon
chr23:12703131-12703271
Length
242 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTTATTTTTGGCAGGTG
3' ss Score
9.18
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
TTGTATGAGACGTCTCTGGTCCGTCATGGTTTGATGACTCTTGGGCCCAGCGGGTCTGGGAAGACAATGGTCATAACAATCCTGATGAAGGCACTGACAGAGTGTGGAAGGCCTCACAGGGAAATGAGAATGAATCCCAAAGCTATTACGGCTCCTCAGATGTTTGGCCGACTGGACACAGCGACCAATGACTGGACAGACGGGATTTTTTCTACTCTGTGGAGAAAAACATTAAAAGCTAAAAAAG
Seq A exon
GTGAAAACATTTTCCTCGTTTTAGATGGCCCTGTGGATGCCATTTGGATTGAGAACTTAAATTCCGTGTTGGATGACAATAAAACCCTCACACTGGCCAACGGAGATCGCATCCCCATGGCCCCAAGCTGCAAGCTTTTGTTTGAAGTCCACAATATCGAGAACGCCTCTCCAGCCACGGTTTCTAGGATGGGCATGGTGTACATCAGCAGCTCTGCCCTCAGCTGGAGACCAATCCTGCAG
Seq C2 exon
GCATGGTTGAAGAAGCGTACTACTCAGGAAAATAATGTATTCCTAACTCTGTATGATAAAATATTTGAGGATGCATATACATTTATGAAACTGAACCTCAATCCGAAAATGCAGCTCTTAGAGTGCAACTATATTGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'61-62,'61-61,62-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(53.3=88.0)
A:
PF077289=AAA_5=PD(46.0=77.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATGAAGGCACTGACAGA
R:
AGTTGCACTCTAAGAGCTGCA
Band lengths:
298-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]