DreEX6039504 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9243393-9248527:+
Coord C1 exon
chr16:9243393-9243539
Coord A exon
chr16:9245325-9245566
Coord C2 exon
chr16:9248351-9248527
Length
242 bp
Sequences
Splice sites
3' ss Seq
TTTATGTTTTGTGTGTATAGGGG
3' ss Score
7.44
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ATTGTGGCCAGCCTCACAGAGAGATGCGCATGAACCCTAAAGCTATAACTGCACCTCAAATGTTTGGTCGACTTGATGTGGCAACCAACGACTGGACTGATGGGATTTTTTCCACCCTTTGGAGGAAAACGCTCCGGGCAAAGAAAG
Seq A exon
GGGAACACATATGGATTGTTCTTGATGGACCGGTTGATGCTATATGGATTGAAAACCTAAACTCGGTGCTGGATGATAACCGCACGCTGACATTGGCCAACGGTGACCGCATCCCCATGGCTCCCAATTGTAAGATTGTGTTTGAGCCGCACAATATCGAAAATGCCTCCCCGGCCACAGTTTCCCGTAATGGAATGGTGTTTATGAGCTCTTCTGTGCTTAATTGGAGCCCTATTTTGGAG
Seq C2 exon
GGTTGGCTGAAGAATCGCTCTGCCCAGGAAGGGATGGTCCTGAAGGATCTTTTCTCCTCCTCTTTCCCTGAGCTCTATAGGTTCAGCATCCAATCGTTGCAGTATAAGATGGAAATGCTGGAGGCCTTCATCATCATGCAGTGCATAAACATGCTGCAAGGACTCATTCAGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(35.8=100)
A:
PF077289=AAA_5=PD(46.0=77.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGATGCGCATGAACC
R:
GCTGAATGAGTCCTTGCAGCA
Band lengths:
304-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]