GgaEX6020582 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76649662-76656635:+
Coord C1 exon
chr2:76649662-76649808
Coord A exon
chr2:76651454-76651695
Coord C2 exon
chr2:76656459-76656635
Length
242 bp
Sequences
Splice sites
3' ss Seq
TCAATTATTTTGGACTGTAGGTG
3' ss Score
6.11
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ATTGTGGACAGCCGCATCGTGAAATGAGAATGAATCCTAAAGCTATAACAGCACCGCAGATGTTTGGTCGTCTTGATGTGGCAACAAATGATTGGACAGATGGAATATTTTCCAGTCTCTGGAGAAAAACTTTAAGAGCCAAGAAAG
Seq A exon
GTGACCATGTCTGGATAGTTCTTGATGGTCCAGTTGATGCTATTTGGATTGAGAACCTTAATTCTGTCCTGGATGACAACAGAACTCTAACACTTGCAAATGGAGATCGTATACCTATGGCACCAAATTGTAAAATAGTCTTTGAACCTCACAATATTGATAATGCTTCTCCAGCAACAGTCTCAAGGAATGGGATGGTATTCATGAGCTCATCAGTTCTCAACTGGAGCCCTATCCTTGAG
Seq C2 exon
GGGTTTTTGAGAAGGCGTTCTTTCCAAGAAGCTGAAATTCTACGTGGGCTGTACTCTTCGTCGTTCCCAGACTTATATCGCTTCAGCATTCAGTCTCTGCAAAGCAAGACTGAGGTGCTGGAAGCCTTTGTGATTATGCAGAGCATTAATATGATGCAGGGCCTTATCCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'43-49,'43-48,44-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(35.8=100)
A:
PF077289=AAA_5=PD(46.0=77.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGCATCGTGAAATGAGAA
R:
GGGATAAGGCCCTGCATCATA
Band lengths:
308-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]