MmuEX6053055 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28340281-28345913:+
Coord C1 exon
chr15:28340281-28340427
Coord A exon
chr15:28343435-28343676
Coord C2 exon
chr15:28345737-28345913
Length
242 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTGGGTGACATCCAGGGG
3' ss Score
3.67
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGTGGAAAGCCTCACAGAGAAATGAGGATGAATCCCAAAGCAATCACAGCCCCACAGATGTTTGGTCGACTCGATGTGGCCACAAACGACTGGACTGATGGAATATTTTCTACCCTTTGGAGGAAGACACTGAAAGCAAAGAAAG
Seq A exon
GGGAACATATCTGGATTGTTCTTGATGGTCCAGTTGATGCCATCTGGATTGAAAATCTGAATTCTGTGCTGGATGATAATAAAACCCTGACTCTGGCCAATGGCGACCGGATCCCCATGGCTCCAAACTGCAAGATTGTTTTTGAACCTCATAACATTGACAATGCTTCTCCCGCCACCGTCTCAAGAAATGGGATGGTTTTCATGAGTTCCTCAGTCCTCGACTGGAGTCCTATTCTTGAG
Seq C2 exon
GGTTTTCTCAAGAGACGGTCTCCTCAAGAGGCTGAAATCCTTCGACAGCTGTATGCAGAGACTTTCCCGGACCTGTATCGGTTCAGCATCCAGAACCTGGAGTTCAAGATGGAGGTACTGGAAGCCTTTGTGATCACACAGAGCACCCACATGCTGCAAGGCCTGATCCCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(35.8=100)
A:
PF077289=AAA_5=PD(46.0=77.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAAGCCTCACAGAGAA
R:
GTGGGTGCTCTGTGTGATCAC
Band lengths:
295-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types