GgaEX6029633 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30665225-30667062:-
Coord C1 exon
chr3:30666816-30667062
Coord A exon
chr3:30665445-30665686
Coord C2 exon
chr3:30665225-30665365
Length
242 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTCTCCAGGTG
3' ss Score
13.54
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TTGTATGAAACTTCTTTAGTACGTCATGGGCTGATGACACTTGGACCCAGTGGATCTGGAAAAACGATGGTCATAACTATATTAATGAAAGCACTGACAGAATGCGGACAACCTCATAGAGAAATGCGAATGAATCCCAAAGCTATTACAGCTCCTCAGATGTTTGGAAAACTAGATGCTGCAACTAATGATTGGACAGATGGAATATTTTCTACACTGTGGAGGAAAACATTGAAAGCTAAAAAGG
Seq A exon
GTGAAAATGTGTTTCTGGTTTTAGATGGTCCTGTAGATGCAATCTGGATTGAGAATCTAAATTCAGTTTTGGATGATAACAAGACTCTCACTCTAGCAAATGGAGATCGAATTCCCATGTCTCCTACTTGTAAGCTGTTATTTGAAGTCCACAACATTGAGAATGCTTCTCCAGCAACAGTTTCTCGTATGGGTATGGTCTACATCAGCTCTTCTGCCCTTAGCTGGAGACCAATATTACAA
Seq C2 exon
GCATGGCTGAAAAAACGTTCTGCTCAAGAAGCTGAAGTTTTGCAAAGTTTGTATGACAGAATCTTTGAACCAGCATATACATACATGAAACTAAACCTTAATCCAAAAATGGAGCTTCTGGAATGTAACTACATTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'50-52,'50-51,51-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(53.3=88.0)
A:
PF077289=AAA_5=PD(46.0=77.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGACACTTGGACCCAG
R:
TGCTGGTTCAAAGATTCTGTCA
Band lengths:
293-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]