RnoINT0049196 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9428315-9428929:+
Coord C1 exon
chr20:9428315-9428561
Coord A exon
chr20:9428562-9428687
Coord C2 exon
chr20:9428688-9428929
Length
126 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
CCATGCATCCTTGTTTTCAGGTG
3' ss Score
9.25
Exon sequences
Seq C1 exon
TTATATGAGACCTCTCTGGTACGGCACGGCCTGATGACCCTCGGGCCAAACAGTTCCGGGAAGACGACGGTCATAACAATTCTGATGAAGTCATTAACGGAGTGCGGGAGGCCCCACAGAGAGATGCGAATGAACCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCCGGCTGGACACAGCCACCAACGACTGGACAGATGGGATCTTCTCCACCCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
Seq A exon
GTAGGCAGGGACGCCCCTCCCAGTCTGCCCTTTCTCTGCAAGCTTATTAACAACGGGAGAGCATTTGCTTGCTCCTTTTTTCTGATGGAGAAACCGATCCATCTTCCCATGCATCCTTGTTTTCAG
Seq C2 exon
GTGAAAACATCTTCCTCATCTTAGATGGCCCCGTGGATGCCATTTGGATCGAAAACCTAAACTCTGTGCTAGACGACAACAAGACACTCACCCTGGCCAATGGGGACCGCATTCCCATGGCCCCGACCTGTAAGCTGCTGTTTGAGGTGCACAACATTGAGAACGCGTCCCCCGCCACGGTGTCGAGGATGGGTATGGTGTACATCAGCAGTTCGGCTCTCAGCTGGAGGCCGATATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(53.3=88.0)
A:
NA
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGACGACGGTCATAAC
R:
TCGATCCAAATGGCATCCACG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]