BtaINT0050732 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12702413-12703027:+
Coord C1 exon
chr23:12702413-12702659
Coord A exon
chr23:12702660-12702785
Coord C2 exon
chr23:12702786-12703027
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TCTGTTCTTATTTTTGGCAGGTG
3' ss Score
9.18
Exon sequences
Seq C1 exon
TTGTATGAGACGTCTCTGGTCCGTCATGGTTTGATGACTCTTGGGCCCAGCGGGTCTGGGAAGACAATGGTCATAACAATCCTGATGAAGGCACTGACAGAGTGTGGAAGGCCTCACAGGGAAATGAGAATGAATCCCAAAGCTATTACGGCTCCTCAGATGTTTGGCCGACTGGACACAGCGACCAATGACTGGACAGACGGGATTTTTTCTACTCTGTGGAGAAAAACATTAAAAGCTAAAAAAG
Seq A exon
GTACACGCAAATTCTTTTCTGCTGATCATTCTTTTTTCCTGCCAGTTTATCCGCAACTCAGTATTTTAATTTTCTTTTTTGATCATCCACAGGTGAAAAGTGATTTTCTGTTCTTATTTTTGGCAG
Seq C2 exon
GTGAAAACATTTTCCTCGTTTTAGATGGCCCTGTGGATGCCATTTGGATTGAGAACTTAAATTCCGTGTTGGATGACAATAAAACCCTCACACTGGCCAACGGAGATCGCATCCCCATGGCCCCAAGCTGCAAGCTTTTGTTTGAAGTCCACAATATCGAGAACGCCTCTCCAGCCACGGTTTCTAGGATGGGCATGGTGTACATCAGCAGCTCTGCCCTCAGCTGGAGACCAATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(53.3=88.0)
A:
NA
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCCTCACAGGGAAATG
R:
GTTGGCCAGTGTGAGGGTTTT
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]