MmuINT0051155 @ mm9
Intron Retention
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30883703-30884333:+
Coord C1 exon
chr17:30883703-30883949
Coord A exon
chr17:30883950-30884091
Coord C2 exon
chr17:30884092-30884333
Length
142 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
CTTCCCGTCCTCATTTGCAGGTG
3' ss Score
12.78
Exon sequences
Seq C1 exon
TTATATGAGACCTCTCTGGTACGGCATGGCCTGATGACCCTCGGGCCCAGCGGTTCTGGGAAGACGACGGTCATAACAATTCTGATGAAATCATTAACGGAGTGTGGGAGGCCTCACAGAGAGATGCGAATGAATCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCAGGCTGGATACAGCCACCAACGACTGGACAGATGGGATCTTTTCCACTCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
Seq A exon
GTAGGCACGGGCCTCCCTCCGAGTTCACTCTTTCCCTGCGAGCTTATTAGAACGGACCTTGCATTTGCTCAGTTTCCCGTTTTCATTAGTTGCAGAAGGAAAAACCGATCTATCTTCCCCTACTTCCCGTCCTCATTTGCAG
Seq C2 exon
GTGAGAACATCTTCCTCATCCTAGACGGCCCCGTGGATGCCATCTGGATTGAGAACTTAAACTCCGTGTTGGACGATAACAAGACGCTCACCCTGGCTAACGGGGACCGCATCCCCATGGCCCCTACCTGTAAGCTGCTGTTTGAGGTGCACAACATTGAGAACGCCTCTCCTGCCACGGTGTCAAGGATGGGCATGGTATACATCAGCAGCTCGGCTCTCAGCTGGAGGCCGATATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-Dnahc8:NM_013811:50
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(53.3=88.0)
A:
NA
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACAGCCACCAACGACTG
R:
AGGCGTTCTCAATGTTGTGCA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: