GgaINT0087327 @ galGal4
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28795750-28797367:-
Coord C1 exon
chr3:28797121-28797367
Coord A exon
chr3:28795992-28797120
Coord C2 exon
chr3:28795750-28795991
Length
1129 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TTTTTTTTTTTTTTCTCCAGGTG
3' ss Score
13.54
Exon sequences
Seq C1 exon
TTGTATGAAACTTCTTTAGTACGTCATGGGCTGATGACACTTGGACCCAGTGGATCTGGAAAAACGATGGTCATAACTATATTAATGAAAGCACTGACAGAATGCGGACAACCTCATAGAGAAATGCGAATGAATCCCAAAGCTATTACAGCTCCTCAGATGTTTGGAAAACTAGATGCTGCAACTAATGATTGGACAGATGGAATATTTTCTACACTGTGGAGGAAAACATTGAAAGCTAAAAAGG
Seq A exon
GTATGTAAACACTATCTTTGGGTTACAATGAAAATGCTTCCTGAATGATGTGTTGAAAAGAATCCCAAGTTTGAAAATAAGGTGAAGTTCTCTCTTGAAAACAAGTATAGATGATATTGCAGGTCTCTTCACAAGAAAGAGGAAGAGTTTAAAAACGTATTGTTTCAATATTGACATTAAACAATAAAAACAATAATAAATAAATGTTTGTTCCCTTGCCACTTTGGTTCTACAGTGCAGATGTGTTACTGGGAGGGTGATAAATTACAGTGAAGATTTACTTGTACTTACTGCGCTAGCTTTAATATTTTTTTCCTGTTGTTTTTCGTGTGTTGACTACTTATTTTTATATTGCAGCGTACTGAAATTCCTTTTCACGGAGGATTCATTTGCACCTTAAAATATTTGTACTAATGAAAGGGAATTCTTCTAGGGTACCTTCCAAGAAGGTGATTCTCTTTTTAAAAAGGGGGGAACAGAGGCCAAGAAGGCAGAGAACCAAGATGCCAAGGCTCCCTTCCTCACTCGGAAGCTGTTCCAGTGTTTGACTACCCTCAGAGTAAAGAGATTTTTCCCAGTACCGCTGGTCTGAACCTCCCCTGGTGAAGATTTGTGCCATTCCTGCACATCCTATTGTTGATTACCAGGGAAAAGGGAGCAGTAGCTCTCTCTCCACTTGCCCTCAGGAAGTTGTAAAGAGCATTGAAGTCTCCTCTCTGCCACCTTTTATCCAAATTAGGAAAAGTGAGTTCCACCTTTCCTCATAGGACATGACCTCCAGACCTTTTACCTGCTTGGTTGCTCTCCTCTGTAAAAATTCAAGTATCCTAACATCCATTCTATAAATATCCTTTATATAAATTAAATTATTTTTTTCAAGTCAAGTCTGTTTTGCGTGACTGTATCTAGTAAACAATCTTTCTCTCTTTGCCTTAAGCCATGAGCATTTCTTCTTAATTTCTCCTCTTTTCCTGTTGAGGAGGGAGAATTGTGCTGTGCAATTCATACAGTAATGAATATCTGTGAAGACAGTAGAATTTACAATAAGCTTGTTCTTTAAGTATGGGTATAGGAACTATAACACTTTTCATTGTTGTTTTTCGTTTGTGTTTTTTTTTTTTTTCTCCAG
Seq C2 exon
GTGAAAATGTGTTTCTGGTTTTAGATGGTCCTGTAGATGCAATCTGGATTGAGAATCTAAATTCAGTTTTGGATGATAACAAGACTCTCACTCTAGCAAATGGAGATCGAATTCCCATGTCTCCTACTTGTAAGCTGTTATTTGAAGTCCACAACATTGAGAATGCTTCTCCAGCAACAGTTTCTCGTATGGGTATGGTCTACATCAGCTCTTCTGCCCTTAGCTGGAGACCAATATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000038200:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(53.3=88.0)
A:
NA
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACAGAATGCGGACAACC
R:
ACGAGAAACTGTTGCTGGAGA
Band lengths:
343-1472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]