MmuINT0051153 @ mm9
Intron Retention
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30881459-30883949:+
Coord C1 exon
chr17:30881459-30881620
Coord A exon
chr17:30881621-30883702
Coord C2 exon
chr17:30883703-30883949
Length
2082 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTGTCATTTGATGGTGTAGTTA
3' ss Score
4.65
Exon sequences
Seq C1 exon
GTTGACGAAGATGAGCCTCTGTTCCTCAGCTTGATCAACGACCTGTTTCCGGGGTTACAACTGGACAGCAGTACTTACGCGGAACTGCAATCCGCGGTGGACAACCAGGTTAACCTAGAAGGTCTGATAAACCACCCACCCTGGAACCTCAAATTAGTGCAG
Seq A exon
GTAAGGGCATCGGAAACCCACAGCGAGTGCCCATCAGCGGTCACGGCGTAGCCCACCCCACGATACTTACCAGATGTGAATGTTGAAACTGAGTTTAGATGCCAGGCCTCCACCATCATACGGCGAATCCTCAGGGTTGCGTTTGTCTTAGGAAAGAGTGCATTGCCCTGTCGTGCGGCAATCAGGCAGTCATTTAGTCGAGCTGTTACTTCACCCTCCTGAGAAGGTTGACGGTTACTGGAATGGGAGATAGTTGGGATGGGGAGGCACGGCCCAGCAGGCCTCTTGCTGTGGGCCTGGCAGTACTACCTGCTGCAGACGCTTCAAGGGGACACACCCTAGAGCATGAGGAACCTAGGTCTGCTCCTTTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGAGGTGTGCAGGTGTGTGTATGAGCATCTGTTGGCATAATTGCTTTGTCATTTTCTTGGGTTATTAGAAGTCTACCTCCCTTCCGACCCTTATTCCTCCCCGATCCCTTCCAGCCCCCAACACTAAGGAGGAGAAAGAGAAGGTCAGAGGGGCGAGGGGGCACAGACCTCTTTAGACTACTTCCTGCAGATGAGAGGGGCATTGTGTTCCTTGGGGCCAGGCTGATCGTCACAGTCAGGAGAGCTCCAGCTTCTTGTTAAACCATCACAAGAGCAAGCAGGAGCAGCAGGAGGCTGCAGGAAGCAGCAGTTGTCTTCTTCCTCCTCCTCTTCTTCCTCCTCCTCCTCTTCTTCCGTCTTCCTCCCTCTCCTCCTCCTTATTCTTCCTGCCTCTCTTAGGGCTCAGGCATGTATGCCCTCCTCAGAGTTCCCAGAATGAAACTATCTGCAGCTGGCAAAAACCATGCCACTGCCCTTGCCCCGATCCGAGGACGAGACAATCATAGTTAACAGCTGTAGACAGATTGAAGCAGGCCCATACCCCACACCTGGGACTAAAACAAAAACATTTACACATAAGGTCACTGGGTGGTTAAAGAAACCAAAACTCTCCCTACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGGATGTGCATATGTGTGAGTGTGAACATGTGTTATGGCTCAACTACATTAGATCTTTAGCCCAGGCTGGCCTAGAACTTCCTATATAGTCGAGGATGGCCCTGACCTGTTGACTGCCCCCCCCCCCTGCTTTTGTCTCTGGAGTGCTGGGATTATAGGAGTGTGCCCCCTTACACGGTGCATCAGAAGCCGAGGGCATCACGTACTCTAGGCAAGCCCCTCCTGATTGAGCTATTTCCACAGCCCACTCCCTGCTGTGTTCTTAGTATGCCTCCTTAAATCCTCTCTCCCACTCCCACGTACCCATGTATGCTTCTTGTTCTCGGAGCAAACGGAAGACTGAAGGCACTTTGTGTGTGGGCGCAGGGGCAGGCATTTCCCGAGCACTTATTGCTCCCAAGTACTATCCCCTCAAGGAAGGATGGCTGGGCGAGGGGATAGGAAGGCCAGGTTCCTCTGCTTCTAGGTGGAGAGTCCCTGGTGGGGTCATGCTTGTCTGCCTGCTGCAGCTGTCCTCCGTTGCACCTTACCCCAGTCTTCCCATCCCTGGGACTGTAATATCCACACCCTTCTTTGTATCTTCCGAGGGCTCTCCCCAAGTAAATCACTTCCACATGCAAAAATCTTTATTCAAGCTGTGCCTCTGGAGACCCAGAGGCAGGCTCAGGGGCACCCTAGATCTTTACCGAGATGCTGTGCGCTGCTGCTTTCCACCACTGGGGGGCGACATCACCACACAGCACACGCACCCACCCACCCATGTCACATGAGGCAGAAAGCAGATCCTGAATTAATTATTTGCAAAATGTAATTCAAGCCCCACGACATCATTACTTTATCACCTATGTTGTTTTTCAACGCCACACTAGTTTTGCTTCCCAAATCCAGTGAAACAAAGGACACTTAGATATTATTTAAAGCCTTTAAAATTTCAGCTAGCACGCAGAAACATCAGCCGGAGACTAATAACCTACGTTTCCCAATGTGTCATTTGATGGTGTAG
Seq C2 exon
TTATATGAGACCTCTCTGGTACGGCATGGCCTGATGACCCTCGGGCCCAGCGGTTCTGGGAAGACGACGGTCATAACAATTCTGATGAAATCATTAACGGAGTGTGGGAGGCCTCACAGAGAGATGCGAATGAATCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCAGGCTGGATACAGCCACCAACGACTGGACAGATGGGATCTTTTCCACTCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-Dnahc8:NM_013811:49
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: