BtaINT0050762 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12771701-12773851:+
Coord C1 exon
chr23:12771701-12771806
Coord A exon
chr23:12771807-12773598
Coord C2 exon
chr23:12773599-12773851
Length
1792 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
CTTTCCTCTTTGGTTTTCAGGTT
3' ss Score
12.34
Exon sequences
Seq C1 exon
GAGTTAGAGTCTGAGAGGGTTAAACTTTTGGAGGATCTGACTTTTAATAAGCGGAAGATGAAAGAACTTGAAGATAACCTCCTCTACAAATTAAGTGCTACAAAAG
Seq A exon
GTATTGTGTTATTAAGAAATAATCACATAATGGATTGTGGATAGATTTCTTGTACCCTCTTTTCAATGCCCTCATGATTATAGATGTCAGGAAACAGTTCAGTTATCAATGCAAAAACAAGCAAGGCAATTTCCATCTAGATATTACAGAGAGACTGCAGGGAATCTGATGCTTAAATTAGCAACTGGCATCTGAGCATTTGATAATAACACAGTTTTCTTGATATAATTGCTTTCTCCTGAGAAAAACAAGGGCTCCCAATACAGCTAGGTAACTCATAATAGGCTAATTTGCTTGCCTGAAGGAAACTAATGCGCTCAATCTTTTTTTGTGTGTTTTTCCATCAGTTCTTTCATTTGGTGTTGAATAGCTGTTACCACAACGGGTTTTGATGTATGTAATCTTGTCAGAGAGACCTGAGCAGCCAGGGCTCAGTCACTCTTGACTTGACTGGACCTCCCACTTAGCAGTTGGGATAGGTTCACCTCTGGGCAGTCAGGTCATCATTCCAACCCCTGATTTGGGGATATACTGTTCTGTAATAGGCAAAATACAGCAACCTAAATTCTATCCTTCATGAGTGAACTAATAATAAATACTTCAACTCAGTGGACGTTAGTTTGAGCAAACTCTGGGAGATAGTGAAGGACAGGGAAGCCCTGTGTGCTGCACTTCATGGAGTCACAGTCCGATGAGACTTAGCGACTGAACAACAGCAAATGAGTGCTTTCCAGAAGCACCTGAACTCTTGGGTAACCTCCCAGAAGTACAGTAAGTGTTACTCTCACAACAGCCTCTAGCACGCTAAGGTGGCTTCATGGCAAAGGTCTTTATCTGCCTTAATTGCACTGCTTGTGCCGATGAAGTTGCCTGTCTCTTGGTCTGTGACTTCTCCCAGCCATTTGAACGGATACCTCTGGGCACTGTAAATATTACCAAGGACTGACTGAGGGTTCCTCCCCCGATCCAGCCAAGAGTGTACTGGATCAAGACCTCTTTCCTGTGAGATTAGTCACAATTTGGACTTCTCTTGCAGACCTAACATGCCCATGAGAGCCTCTCAGCACCTTCCAGTAGCATCCACCTGCTCCCAGGTGGGCCAGAGCTTCGCACTCTGAAGATATCCTGACTGTCATCTCAGCACATCCAGAGCATCTTTCTGTGCCTTAAAACTGAGTTTATTGTCATAGACATGTTTAGGTCTATTCAGAAGGGTAAAACTGAAAACTAAATGCTGAAAAATCAGCATTTTTCTTCCTGGTCAGACACTTCCACTATCCCCTAATTTACTAGAGACGTAGGAGGATCAGAGTCCTCAATGTCAAGGACTGTTGGACAAAAGCAGGAGTAGAAAGTGTACAGCTCACCTGCAAGCTAGTGGGTAATGTTTGGGTCAGCCTGTGCTGTGAGACAAATGGGACGGAAAAGCCCACGATGCCATGAGGGCACCCAGCAAGATGATAAAAGAGGCAACAGCACCGTCACATAAAGAACAGCTGAAACCGCTGGGACTGGTGGGAGACATGAGTTTTCTTTAAACATTTGAGGAACAGACATGTGGGCTATCTTGAGAACTGCCTTTTGCACATTTTCAGGCTGGAATGTTAGAACGAATTGAAGCCTCAGATAGATAGCTGGACTAGAAGCCTTTCCATGTCTCAAGATTCACCTTTCCACCCTGTGGGCTTTGAAGAAGTCAAGTTGAAAACTAACGGGATGATTAGAGAAGTGATGCATCTCTCTTTGTGAATTTCCCATCTCGCGTTCCCCAGCTTTCCTCTTTGGTTTTCAG
Seq C2 exon
GTTCCTTGGTAGACGATGAATCTCTCATTGGTGTCCTCCGCACCACCAAGCTGACAGCCGCTGAAGTCAGTGAAAAACTACACGTAGCTGCAGAAACGGAGGTCAAGATTAACACTGCCCAGGAGGAGTTCCGGCCCGCGGCCACCCGCGGCAGCATCCTCTACTTCCTCATCACGGAGATGAGCATGGTCAACATCATGTACCAGACCTCGCTGGCCCAGTTCTTGAAATTATTTGACCAGTCCATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:76
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(15.2=100)
A:
NA
C2:
PF127812=AAA_9=PD(10.0=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTGAGAGGGTTAAACTTTTGG
R:
TGGTCAAATAATTTCAAGAACTGGGC
Band lengths:
342-2134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]