GgaINT0087356 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30632225-30633383:-
Coord C1 exon
chr3:30633278-30633383
Coord A exon
chr3:30632478-30633277
Coord C2 exon
chr3:30632225-30632477
Length
800 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCTG
5' ss Score
-0.32
3' ss Seq
TCTGCTATTTCACCTTTTAGGCT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GAACTGGAGGCAGAACGAATTAAACTCATGGAAGACGTAACTTTTAATAAAAGGAAGATGAAAGAACTGGAAGACAATCTTCTATACAAACTAAGTGCAACTAGAG
Seq A exon
GTTCTGTATCAAACTGTAAAATAAGTAGGAATTTTATACGGCTAATTAAGCTGCTGAACATTAGAACCTTACCATACAGAAACTGATTTGTCCACTCAAAATGTAATGAATGAACTTGTAATGACAGAGATTTGAAGTATGTGAAACTTGGTATGATAGCATGCCATTATATATTCATTGCAGGTACTAGGTGTTTTTAGGCACCTAAACAATTTTTGCAAAGTAAACCAATTTATTGGGATGAGATACAAAATCTGATCATGGGCAAAACCTTAAACCATTGAAAATGCAGAGTTAAATGGGATAGATAAAATGTTACTGATGCAAAAACTTGTGTGTCATATTAGGAGCCTGCATCTGATCAATTTCTTTATCATAGGTAGAAAAAAAAAAAAGTGGTAACTTCTAGTAAATGGAAATATGTATGAATGCTATTATGTGACCATTGCTTTTAAGACTCTAAGTCTTTTTGAGTGAACAGTCAACAAATTTTAAAAATAATTAAGTAACAGTGCATGGATACTGTACTTTATGTGCCACAGAGAGTTGACCTCTCTAGTACATGCTGCGAAGCTCTTTGTACTGATACATTCAAATTGACATGAATTGCATGCATTTGTTCAGTGCCCTGAATTTAAAAATATTTTTTCATATCCTGTTTTGTCTCTGTTTTAAAATGTTTTCTGCAATTCAGAAAATCATTTTCATTTGGTGTGAATCATTCATTTTGATTTTTACAATTTTGGAGTTTTAAAAAAAGTGACAAAACTGTCCTAAATATCTGCTATTTCACCTTTTAG
Seq C2 exon
GCTCACTGGTAGATGATGAATCCCTGATTGGAGTTCTGCAAACAACTAAACAAACAGCTGCCGAAGTAACTAAAAAGTTGTCCGTAGCAGCAGAAACTGAAGTGAAGATTAACTCTGCTCAGGAGGATTATCGACCTGCTGCTACGCGTGGGAGCATTCTTTACTTTCTTATTACAGAAATGAGCATGGTCAATAATATGTATCAGACTTCACTGGCTCAGTTCTTAAAGTTATTTGATCAATCCATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:79
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(15.2=100)
A:
NA
C2:
PF127812=AAA_9=PD(10.0=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGAGGCAGAACGAATT
R:
TGGCCATGGATTGATCAAATAACT
Band lengths:
358-1158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]