BtaINT0050797 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31054610-31055346:+
Coord C1 exon
chr19:31054610-31054849
Coord A exon
chr19:31054850-31055185
Coord C2 exon
chr19:31055186-31055346
Length
336 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTCTGCCACTCCCTCTCTAGGTA
3' ss Score
11.97
Exon sequences
Seq C1 exon
GTGGCCCTGACCTGCACCCAGATCTGGTGGACCACAGAGGTGGGCATGGCATTTGCAAGGCTGGAGGAAGGCTATGAGAATGCCATGAAGGACTATTACAAGAAGCAAGTGGCCCAGCTCAAAACCCTCATCACCATGCTCATTGGCCAGCTCTCCAAGGGGGACCGGCAGAAGATCATGACCATATGCACCATCGATGTCCATGCCCGGGACGTGGTGGCCAAGATGATTGCTCAGAAG
Seq A exon
GTGAGTCCCGGACTCTCAAGAGTACCGCTCTTTGTGGGTAGCTATACCACAAGTATTGGGATTTGGGAGAAGCTCACATGTGGCCAAAACACAGGGCCTCCAAACTCTGCACCAGTCGGGGATCTGGGAGAAGATCAAGGTGGCTGCTCCTACCTTAAAAACCCCAGCAAAACAGCATCATCCAAGTGGCTCGTGCTTTCTGTGCCATACCGGGCAGTGTGCTGCTCTCCTGAATTGTGCACAACACCTGAGCCCTGTGAATTCTGCAGCCATGGGGCCACCTCCTACCTGTTGAATCTTGTGATTTACCAACCTACTCTGCCACTCCCTCTCTAG
Seq C2 exon
GTAGATAACGCCCAGGCCTTCCTCTGGCTGTCCCAGCTAAGGCACCGATGGGATGACGAGGCCAAACACTGCTTCGCCAACATCTGTGATGCCCAGTTTCTATACTCCTATGAGTACCTGGGAAATACCCCTCGCCTGGTGATCACGCCCTTGACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.0=35.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGAGGAAGGCTATGAGA
R:
CTGTCTGTCAAGGGCGTGATC
Band lengths:
343-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development