RnoINT0049250 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52592792-52593803:-
Coord C1 exon
chr10:52593564-52593803
Coord A exon
chr10:52592953-52593563
Coord C2 exon
chr10:52592792-52592952
Length
611 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATCTGCCACTCCTCCTTTAGGTT
3' ss Score
10.83
Exon sequences
Seq C1 exon
GTGGCTCTGACCTGCACTCAGATCTGGTGGACGACAGAGGTGGGCATTGCATTTGCCAGGCTGGAAGAAGGCTATGAGAATGCCATGAAGGACTACTATAAGAAGCAAGTGGCCCAACTCAAAACCCTTATCACCATGCTAATCGGGCAGCTCTCCAAGGGGGACAGGCAGAAGATCATGACCATATGCACTATTGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAAAAG
Seq A exon
GTAGGTGCTGTATCACCAGATATGTTTCCCATTCCCTCTGGACAGCTCCAAGATAGCCCCTGGATCTACACATCATCAGAATGAGAAGCATGGTAGTTCCTGCTTCCTTTCAAACCTTCCAGCACAACAGTATAGGGGTAGTCCTTGATAGATGATAGCTCAGTGTATGATGTTTTGACTTAATGGAGGTAGGAAAGCAATATGTATGTATTAGAGACTATACTTTTATTGTAGTGTGTAATTAAGAATATGAGCTACTCAACACAATCCTGTATTGGACATTATGTAAAATGGTTTTATCCAACTATAGAGTAATGAAAATACTTTCACTGTGTAAGGTGGTTATGGTGTTTAGTAGGATAAGTGGATCAAATTCTTTTTCCACTTAAAACATTTCAATCTATCATGAGCTTATTATCGGGATGTAACCCCCGCATAATCTGGGAAACATCTGTAATCAGAACTGCCTATGCTTTTCTGTTCTATGGGCCAGAGTAACCTGCACTCTGAATTATCAGACAACATCTAAGCTGCCTAGAGGCTTCTATGTCCTATGAACAGAGGGCTACCTATCTATAAGGCACCCATCTGATCTGCCACTCCTCCTTTAG
Seq C2 exon
GTTGACAATGCCCAGGCTTTCCTCTGGCTGTCACAGCTACGCCATCGTTGGGATGATGAGGCCAAGCACTGCTTTGCTAACATCTGCGATGCCCAGTTTCTATATTCCTATGAGTACCTGGGAAATACCCCTCGCCTGGTGATCACGCCTTTGACTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(79.2=35.2)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCCAGGCTGGAAGAAGG
R:
CAGTCAAAGGCGTGATCACCA
Band lengths:
347-958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]